PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100178110111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YB | ||||||||
Protein Properties | Length: 246aa MW: 27957.4 Da PI: 7.9222 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 140.3 | 5e-44 | 83 | 157 | 23 | 97 |
NF-YB 23 anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+eg++ Ote100178110111|100178110111 83 XNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKMYLNRYREMEGDT 157 69***********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-39 | 84 | 169 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.85E-30 | 84 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-19 | 84 | 131 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.8E-20 | 95 | 113 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 98 | 114 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.8E-20 | 114 | 132 | No hit | No description |
PRINTS | PR00615 | 1.8E-20 | 133 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKQEGDTWGE ANSKSHKPTF DGGRAVVAGS SREPRRWQPR QRRRSEPXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXNGKIAKD AKETVQECVS EFISFITSEA SDKCQREKRK 120 TINGDDLLWA MATLGFEDYI DPLKMYLNRY REMEGDTKGS VKGADGSAKK DPLQQQLPST 180 QLLHQGSFTQ GMPYGSTQEM QQYIFEFCYA PTSSTYDGPN ARCGLKMGDL QPTQSLDSVR 240 NILQFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 4e-33 | 84 | 152 | 25 | 93 | NF-YB |
4awl_B | 5e-33 | 84 | 152 | 26 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 5e-33 | 84 | 152 | 26 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094723.1 | 2e-67 | nuclear transcription factor Y subunit B-8 | ||||
STRING | Migut.J00411.1.p | 1e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |