PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100176820031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 332aa    MW: 36532 Da    PI: 4.6571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100176820031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-13118161247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     W++ E ++l++a+  +G + Wk++a+++g gR  k+c+ r+ k+
  Ote100176820031|100176820031 118 SDWSEKETLQLLEAIMHYGDD-WKKVAEHVG-GRNVKECVARFIKL 161
                                   67*****************88.*********.**********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093412.539136IPR007526SWIRM domain
Gene3DG3DSA:1.10.10.108.8E-6430IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF466893.76E-5537IPR009057Homeodomain-like
PROSITE profilePS5129320.923115166IPR017884SANT domain
SMARTSM007177.3E-12116164IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-13117169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-9117160IPR009057Homeodomain-like
PfamPF002492.7E-12118161IPR001005SANT/Myb domain
CDDcd001678.71E-10120161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRKTIVGDVG SIRRVFDFLE AWGLINYAGS TSRPQLKWED KETKSTAQGG DSGSGGGDAA  60
ASRKRVCSGC KTPCTIACFA SEKHDMTLCA RCYVRGNYRV GLNSSDFKRV EISEEAKSDW  120
SEKETLQLLE AIMHYGDDWK KVAEHVGGRN VKECVARFIK LPFGEQFDGP PESGELDTEF  180
GLQNATLPVK RMHLSPLADA SNPIMAQSAF LSTLVGVDVA EMAACAAVTA LSNVGEGKQR  240
EFSNGDAPNN IEESLNEAKS QLEKEEAELE NAISGITTQT KEIADKILHF EEMDLQMEGK  300
WQQFQQLQNM LFVDQLAILF NKNTAEKSAE PD
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling. {ECO:0000269|PubMed:12140326, ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636, ECO:0000269|PubMed:19033529}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074252.11e-165SWI/SNF complex subunit SWI3B
SwissprotQ84JG21e-110SWI3B_ARATH; SWI/SNF complex subunit SWI3B
TrEMBLA0A4D9ANB51e-164A0A4D9ANB5_SALSN; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
STRINGMigut.N02988.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1000122
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]
  4. Archacki R, et al.
    Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes.
    Planta, 2009. 229(6): p. 1281-92
    [PMID:19301030]
  5. Zhu Y,Rowley MJ,Böhmdorfer G,Wierzbicki AT
    A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing.
    Mol. Cell, 2013. 49(2): p. 298-309
    [PMID:23246435]
  6. Liu ZW, et al.
    Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006026
    [PMID:27171427]
  7. Han W, et al.
    The SWI/SNF subunit SWI3B regulates IAMT1 expression via chromatin remodeling in Arabidopsis leaf development.
    Plant Sci., 2018. 271: p. 127-132
    [PMID:29650150]