PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100176510131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 397aa    MW: 45359.7 Da    PI: 6.4536
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100176510131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.58e-073293572755
                                   HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  27 aeereeLAkklgLterqVkvWFqNrRake 55 
                                   ++e+  LA+++gL+++q+ +WF N+R ++
  Ote100176510131|100176510131 329 ESEKVALAESTGLDQKQINNWFINQRKRH 357
                                   678889********************885 PP
2ELK35.91.6e-12241262122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK++Ll+KYsgyL+sLkqE+s
  Ote100176510131|100176510131 241 ELKNHLLKKYSGYLSSLKQELS 262
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-2298142IPR005540KNOX1
PfamPF037903.3E-23100141IPR005540KNOX1
SMARTSM012561.6E-26149200IPR005541KNOX2
PfamPF037914.0E-23153199IPR005541KNOX2
PfamPF037897.9E-10241262IPR005539ELK domain
PROSITE profilePS5121311.243241261IPR005539ELK domain
SMARTSM011881.0E-6241262IPR005539ELK domain
SMARTSM003890.002263364IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-25266292IPR009057Homeodomain-like
CDDcd000861.52E-7329361No hitNo description
PROSITE profilePS500719.701329360IPR001356Homeobox domain
PfamPF059202.5E-9329356IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.604.2E-25329363IPR009057Homeodomain-like
SuperFamilySSF466891.07E-9329372IPR009057Homeodomain-like
PROSITE patternPS000270335358IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEYNHQMSE NSNSRCNLLY GGSVLAPAAS NSVYGRSSFH LQSGNCYDQS ETQTVKSESG  60
GAQDHASRFH YNPITRPYPT AVEDHRRRQD YPDSGEAESI KAKIIAHPQY SSLLDAYMDC  120
QKVGAPPEVV ARLTAARQEF EASHRATAAG RDVSKDPELD QFMEAYYDML IKYREELTKP  180
IHEAMEFMKR IEKQLSMLTN TPLRIFNSED KYDGGSSEEE QENSGGETEL PEIDPRAEDR  240
ELKNHLLKKY SGYLSSLKQE LSKKKKKGKL PKDARQKLLS WWELHYKWPY PSVYTYITYL  300
PSSPSLLAXX XXXXXXXLLK CMCGVGVQES EKVALAESTG LDQKQINNWF INQRKRHWKP  360
SEDMQFMVMD GLHPQNAAAA LYMEGHYMAD GPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870906.10.0homeotic protein knotted-1 isoform X2
SwissprotQ413301e-162KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A4D9BCY31e-180A0A4D9BCY3_SALSN; Uncharacterized protein
STRINGEOY156241e-171(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333