PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100176240001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 325aa MW: 36917.3 Da PI: 7.5587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100176240001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.2	7.2e-26	69	156	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenl..nkrykkikegekkrtsessst 78 rW++qe+l+L+++r++++ +r++++k+plW+evs+ m +e g++rs k+C+ek+en k+ykk+keg+ +r ++ ++ Ote100176240001\|100176240001 69 RWPRQETLTLLDIRSRLDPMFREANQKGPLWDEVSRIMsEENGYQRSGKKCREKFENXxxXKYYKKTKEGKAGR--QDGKH 147 8***********************************8899***********73369******98..55667 PP trihelix 79 cpyfdqlea 87 +++f+qlea Ote100176240001\|100176240001 148 YRFFRQLEA 156 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.806	68	127	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-16	69	157	No hit	No description
CDD	cd12203	1.03E-18	69	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEDQYGMADL RHYIDGRPFF PAIAQPPDLL SCHGGLTSPY PYDMLVFRSD STSHAVALEA 60 EPNGGGPGRW PRQETLTLLD IRSRLDPMFR EANQKGPLWD EVSRIMSEEN GYQRSGKKCR 120 EKFENXXXXK YYKKTKEGKA GRQDGKHYRF FRQLEAIYGS AKTTINSSHY PNSLPSDQEI 180 SLISAPDSCE YDTTSSYCSD SNVGLLDTST NNDDHKKGKG KRSLKAKIEE TIKAQMKKMM 240 EKQDAGQEMW ASERAWIEAR DIALMDAFNK LAGKEFILMP GDCNKKRKDN INDGGVEGAI 300 RLNGHGDDPR NNEVKDYYHP RKYVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022864074.1	4e-92	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	4e-58	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A4D9AFT5	1e-105	A0A4D9AFT5_SALSN; Uncharacterized protein
STRING	Migut.J00979.1.p	3e-82	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]