PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100175460201
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29835.9 Da    PI: 8.371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100175460201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-18119173256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Ote100175460201|100175460201 119 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 173
                                   788899***********************************************98 PP
2HD-ZIP_I/II128.62.7e-41119208191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+
  Ote100175460201|100175460201 119 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 199
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   ke +eLr +l
  Ote100175460201|100175460201 200 KELQELR-AL 208
                                   ******9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17103173IPR009057Homeodomain-like
SuperFamilySSF466897.1E-19110176IPR009057Homeodomain-like
PROSITE profilePS5007116.86115175IPR001356Homeobox domain
SMARTSM003895.1E-15117179IPR001356Homeobox domain
PfamPF000461.2E-15119173IPR001356Homeobox domain
CDDcd000868.64E-16119176No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PfamPF021835.5E-11175209IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.2E-26175218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAAGKPSSDA EKTVKTDETG FFAASRRSSS SDXXXXXQLE LLPFSPVQRT QPSSSNKLPF  60
PWLNDKLGGE ALKGTAAADD GDQEGADFEQ FAANNCGEAD GDRGASSRGS DEEDNGLARK  120
KLRLTKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD  180
CEYLKRCCET LTEENRRLQK ELQELRALKA SQPFYMQLPA TTLTMCPSCE RVVXXXXXXX  240
XXXXXXSKGS KHFALSPPRA HSPQTAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075258.11e-109homeobox-leucine zipper protein HOX11
TrEMBLA0A4D9B7B61e-105A0A4D9B7B6_SALSN; Homeobox-leucine zipper protein
STRINGcassava4.1_010584m2e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186