PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100175130072

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 596aa MW: 65080.6 Da PI: 6.5533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100175130072	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24	7.1e-08	335	366	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f++Lre++P++ ++K +Ka+ L +++eYI+ Lq Ote100175130072\|100175130072 335 FHKLREIIPNS----DQKRDKASFLLEVIEYIQFLQ 366 89******9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.835	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-10	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-5	335	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-13	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.20E-6	335	369	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MELPLGTEGR KATHDFLSLY SSSATHNQQD ISPPQDSGGS GRCRMIVGGE KEIGNILGEQ 60 PTSGAVNVPV TPSEYVRSEH LSLAVGHLLD WLTLPNPKRL RLELSAELIC CWAGLGHFRH 120 CGYLKTHDFL QPLERVEKNV TTTTREDFKV VVAAVDRPPV SSPPASVEHI LPGGIGTYSI 180 SYFNQMVVKP EGSLFTAQPS STTKHNEKSN RSSHPGGSFT LWDESAIKKG KTGKENIAAE 240 RHILREAGVN VVGGQCMPFL ENPSQSSSNC RNSNTKFSSF SCSQPSSSSQ KNQSFMDMMI 300 TSAKIDLEEE DDDEEEFSIK KEPSSHSKGY LFLIFHKLRE IIPNSDQKRD KASFLLEVIE 360 YIQFLQEKVN RYESSYNAWN QEPSKMMHWQ RNCHMNEGFT DGTRGVSSDS APAVSIFGKK 420 LDESKAAVSR SLPVSGQNLV DSDLSTATTL REGIQPPEST SKATTVHSPM QPNISSLGGT 480 SSISNVNRTT TWPPSQLRTN CTDAGYKMSE QELTVESGTI NISSVYSQGL LNTLTQALRS 540 SGVDLSQASI SVQIDLGKRA NGATHSSTVA SKEDEFHGAA CAAEELGHVS KKLRTS

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MELPLGTEGR KATHDFLSLY SSSATHNQQD ISPPQDSGGS GRCRMIVGGE KEIGNILGEQ  60
PTSGAVNVPV TPSEYVRSEH LSLAVGHLLD WLTLPNPKRL RLELSAELIC CWAGLGHFRH  120
CGYLKTHDFL QPLERVEKNV TTTTREDFKV VVAAVDRPPV SSPPASVEHI LPGGIGTYSI  180
SYFNQMVVKP EGSLFTAQPS STTKHNEKSN RSSHPGGSFT LWDESAIKKG KTGKENIAAE  240
RHILREAGVN VVGGQCMPFL ENPSQSSSNC RNSNTKFSSF SCSQPSSSSQ KNQSFMDMMI  300
TSAKIDLEEE DDDEEEFSIK KEPSSHSKGY LFLIFHKLRE IIPNSDQKRD KASFLLEVIE  360
YIQFLQEKVN RYESSYNAWN QEPSKMMHWQ RNCHMNEGFT DGTRGVSSDS APAVSIFGKK  420
LDESKAAVSR SLPVSGQNLV DSDLSTATTL REGIQPPEST SKATTVHSPM QPNISSLGGT  480
SSISNVNRTT TWPPSQLRTN CTDAGYKMSE QELTVESGTI NISSVYSQGL LNTLTQALRS  540
SGVDLSQASI SVQIDLGKRA NGATHSSTVA SKEDEFHGAA CAAEELGHVS KKLRTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078682.1	0.0	transcription factor BIM1 isoform X1
TrEMBL	A0A0H3Y905	0.0	A0A0H3Y905_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D01611.1.p	1e-156	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45