PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100175130071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 642aa    MW: 70371.4 Da    PI: 7.1052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100175130071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.00042348365219
                                   HHHHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsa 19 
                                   r +h++ E+rRR++iN++
  Ote100175130071|100175130071 348 RSKHSATEQRRRSKINDR 365
                                   889*************96 PP
2HLH24.26e-083814122055
                                   HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   f++Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Ote100175130071|100175130071 381 FHKLREIIPNS----DQKRDKASFLLEVIEYIQFLQ 412
                                   89********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-21343433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12344431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.528346411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-11348415No hitNo description
SMARTSM003535.6E-5352417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5381412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MELPLGTEGR KATHDFLSLY SSSATHNQQD ISPPQDSGGS GRCRMIVGGE KEIGNILGEQ  60
PTSGAVNVPV TPSEYVRSEH LSLAVGHLLD WLTLPNPKRL RLELSAELIC CWAGLGHFRH  120
CGYLKTHDFL QPLERVEKNV TTTTREDFKV VVAAVDRPPV SSPPASVEHI LPGGIGTYSI  180
SYFNQMVVKP EGSLFTAQPS STTKHNEKSN RSSHPGGSFT LWDESAIKKG KTGKENIAAE  240
RHILREAGVN VVGGQCMPFL ENPSQSSSNC RNSNTKFSSF SCSQPSSSSQ KNQSFMDMMI  300
TSAKIDLEEE DDDEEEFSIK KEPSSHSKGN LSVKVEAKTI DQKPNTPRSK HSATEQRRRS  360
KINDRHVFQP SQLMSSYHPE FHKLREIIPN SDQKRDKASF LLEVIEYIQF LQEKVNRYES  420
SYNAWNQEPS KMMHWQRNCH MNEGFTDGTR GVSSDSAPAV SIFGKKLDES KAAVSRSLPV  480
SGQNLVDSDL STATTLREGI QPPESTSKAT TVHSPMQPNI SSLGGTSSIS NVNRTTTWPP  540
SQLRTNCTDA GYKMSEQELT VESGTINISS VYSQGLLNTL TQALRSSGVD LSQASISVQI  600
DLGKRANGAT HSSTVASKED EFHGAACAAE ELGHVSKKLR TS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078682.10.0transcription factor BIM1 isoform X1
TrEMBLA0A4D8ZFI00.0A0A4D8ZFI0_SALSN; Uncharacterized protein
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345