PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100175090082
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 582aa    MW: 63486.8 Da    PI: 9.4325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100175090082genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.5e-23220259241
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers 41 
                                   +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  e +
  Ote100175090082|100175090082 220 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFEXA 259
                                   7**********************************98876 PP
2WRKY35.12.7e-11387409123
                                   ---SS-EEEEEEE--TT-SS-EE CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                                   ldDgy+WrKYGqK+v+g+++pr+
  Ote100175090082|100175090082 387 LDDGYRWRKYGQKVVRGNPNPRA 409
                                   59*******************96 PP
3WRKY55.79.5e-184484862159
                                   -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++sYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Ote100175090082|100175090082 448 SKSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 486
                                   68************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-20206259IPR003657WRKY domain
PROSITE profilePS5081118.751214259IPR003657WRKY domain
SuperFamilySSF1182901.7E-18216259IPR003657WRKY domain
SMARTSM007742.0E-18219271IPR003657WRKY domain
PfamPF031065.5E-17220259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-34372407IPR003657WRKY domain
SuperFamilySSF1182904.58E-9379408IPR003657WRKY domain
PROSITE profilePS5081131.341382488IPR003657WRKY domain
SMARTSM007741.1E-34387487IPR003657WRKY domain
PfamPF031061.7E-6388408IPR003657WRKY domain
PfamPF031061.1E-12448486IPR003657WRKY domain
SuperFamilySSF1182905.75E-14448488IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-34449488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MENHXXXXXX XXXXXXHPSD NGPPHVTDGG GSTNGARYRL LSPAKLPISR STCITIPPGL  60
SPTSFLESPV LLSNIKAEPS PTTGSFFKPQ SIHASGGNAV VPLEKSFTSG NTVDENSSSG  120
FEFRFHTGVS STAGLSSVGM SIPVGMNRNG LVPHQDQRFS QCAPPSSLAS QSIAVARQDS  180
SAYDNIDELN QGGQSNTGIQ TSVSEQKDSS SSVSAERTSE DGYNWRKYGQ KLVKGSEFPR  240
SYYKCTYPNC EVKKIFEXAL QVDRSQKLCT RVHMIILNLK VHAVTILVPF CPFKRINRTG  300
ACHSLVKRVS TNNMEQSGSP MLSPLQANEE AIDGSGLQYQ GIXXXXXXXX PFLKRRKMED  360
GIDITPVVKP IREPRVVVQT VSEVDILDDG YRWRKYGQKV VRGNPNPRAE QLPLNTGQEL  420
RGVYVMEXXX XXKRRRPVGL SRAVTGRSKS YYKCTNAGCP VRKHVERASH DPKAVITTYE  480
GKHNHDVPTA RNSSHEFAGT TSYGGGASKM RPQDSSSSIS LDLGVGIGRA GENKSDEGER  540
GLRYDIVNGG LNLYGNSVEA HNFQTPASNQ CAPTLGRILM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29209488277Probable WRKY transcription factor 4
2lex_A2e-29209488277Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095503.10.0probable WRKY transcription factor 20
TrEMBLA0A4D9BBE20.0A0A4D9BBE2_SALSN; WRKY transcription factor 33
STRINGMigut.M01679.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344