PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100174760231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CO-like

Protein Properties

Length: 422aa MW: 47414.7 Da PI: 5.7843

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100174760231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + ++ lC+dC ++H H++++ Ote100174760231\|100174760231 47 LCERCHSEPAMTRCIEESTSLCQDCNWAGHAAppssaeHKRQT 89 7*****************************7688888888776 PP
2	CCT	66.7	6.5e-23	365	408	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeKrk+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ Ote100174760231\|100174760231 365 RDDAVLRYKEKRKSRKFDKKIRYASRKARADVRKRVKGRFVKAG 408 899**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.0E-7	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.34E-5	3	35	No hit	No description
PROSITE profile	PS50119	9.343	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	0.00939	47	90	No hit	No description
SMART	SM00336	1	48	90	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.8E-17	365	407	IPR010402	CCT domain
PROSITE profile	PS51017	15.596	365	407	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGRSCDFCGE QRSIVHCRSD AACLCLSCDR NVHSANALSK RHLRTLLCER CHSEPAMTRC 60 IEESTSLCQD CNWAGHAAPP SSAEHKRQTI NLYSGCPSAA EFSRIWPFFS VDESTCNPEP 120 SLEEGSESPR QCEMPQLETI APEVEQFLNH KVRFPCIHVL AVAEVDWEKH QEDFGRSHKK 180 TDADEFYNLH LFGDTISWPC QEKACSSKTK HLGPSHDTPC QNLDISDVDL SLDDYEALFD 240 ESINDPQHFF ENGGGDSLFD LGEFYGTGCN IDSALLEKAS TSKSETKKQT CSNPLSSESM 300 TSCKSYSNFC APKPALSTLS ISFSGQTTEC NIGDHHESGG FSSVIEEEHP YDTLCHEHLF 360 SSAIRDDAVL RYKEKRKSRK FDKKIRYASR KARADVRKRV KGRFVKAGDP YDYDPLDLIR 420 SQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGRSCDFCGE QRSIVHCRSD AACLCLSCDR NVHSANALSK RHLRTLLCER CHSEPAMTRC  60
IEESTSLCQD CNWAGHAAPP SSAEHKRQTI NLYSGCPSAA EFSRIWPFFS VDESTCNPEP  120
SLEEGSESPR QCEMPQLETI APEVEQFLNH KVRFPCIHVL AVAEVDWEKH QEDFGRSHKK  180
TDADEFYNLH LFGDTISWPC QEKACSSKTK HLGPSHDTPC QNLDISDVDL SLDDYEALFD  240
ESINDPQHFF ENGGGDSLFD LGEFYGTGCN IDSALLEKAS TSKSETKKQT CSNPLSSESM  300
TSCKSYSNFC APKPALSTLS ISFSGQTTEC NIGDHHESGG FSSVIEEEHP YDTLCHEHLF  360
SSAIRDDAVL RYKEKRKSRK FDKKIRYASR KARADVRKRV KGRFVKAGDP YDYDPLDLIR  420
SQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095879.1	1e-138	zinc finger protein CONSTANS-LIKE 10 isoform X1
TrEMBL	A0A4D9AZQ7	1e-179	A0A4D9AZQ7_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68