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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100172530041 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | ARF | ||||||||
| Protein Properties | Length: 565aa MW: 63526.4 Da PI: 9.1796 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 73.5 | 2.6e-23 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74
f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L
Ote100172530041|100172530041 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRL 208
99*****************************7444..44459*************************************** PP
-TT-EEEEEE-SSSEE..EEEEE-S CS
B3 75 kegDfvvFkldgrsefelvvkvfrk 99
+gD+v+F ++++ +l+++++r+
Ote100172530041|100172530041 209 VAGDSVLFI--WNEKNQLFLGIRRA 231
*********..8889999***9986 PP
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| 2 | Auxin_resp | 119.7 | 2.3e-39 | 256 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80
aahaast+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wr
Ote100172530041|100172530041 256 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWR 336
79*********************************9789****************************************** PP
Auxin_resp 81 sLk 83
s+k
Ote100172530041|100172530041 337 SVK 339
985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.45E-49 | 115 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 8.4E-41 | 125 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.08E-21 | 129 | 225 | No hit | No description |
| SMART | SM01019 | 1.7E-23 | 130 | 232 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.2E-21 | 130 | 231 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.21 | 130 | 232 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.3E-34 | 256 | 339 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 565 aa Download sequence Send to blast |
MNTMKLSASE MGQQAHEGEK KCLNSELWHA CAGPLVSLPT VGSRVVYFPQ GHSEQVAATT 60 NKEVDAHIPN YPSLQPQLIC QLHNVTMHAD VETDEVYAQM TLQPLTPQEQ KDAYLPVELG 120 IPSCQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQTPPAQEL IARDLHDVEW 180 KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLFLGIRR AARPQTVMPS 240 SVLSSDSMHI GLLAAAAHAA STNSCFTVFY NPRASPSEFV IPLSKYAKAV YHTRVSVGMR 300 FRMLFETEES SVRRYMGTIT GIGDLDPVRW ANSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS LFPLRLKRPW YPGASSFQDA GSDTINGMQW LRGEASEQGF NSINFQSVGM 420 LPWMQQRFDP TGVRNDLNQQ YQALLAAGLQ NFGSGDLPKH QLTTFQQPIH YLQHAGSQNP 480 QSQQQNVIQP SVSSHTLPLP TQMLSDNMQR XXXXXXXXXX SRQPNRRKSA ASYLSGSIYR 540 TRSSEAPTRY SFPFIYKTGT SKLRD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-159 | 1 | 360 | 34 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027075605.1 | 0.0 | auxin response factor 8-like | ||||
| Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
| TrEMBL | A0A2G9H4W8 | 0.0 | A0A2G9H4W8_9LAMI; Auxin response factor | ||||
| STRING | XP_009612885.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3857 | 23 | 39 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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