PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100172330301

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 450aa MW: 49914.2 Da PI: 7.0035

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100172330301	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.3e-11	146	187	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Ote100172330301\|100172330301 146 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 187 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-5	143	208	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	145	189	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.9E-8	145	189	No hit	No description
Pfam	PF00170	7.2E-8	146	188	IPR004827	Basic-leucine zipper domain
CDD	cd14708	8.65E-22	147	197	No hit	No description
SuperFamily	SSF57959	6.61E-7	147	190	No hit	No description
PROSITE pattern	PS00036	0	150	165	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-30	228	303	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MERNQEGPAF DFGELEEAII LQGVKINNDD TKQPLYSAIR PSATLEMFPS WPMRFQQHTP 60 RGSSKSGEES TDSGSALNTL SNTPESPVSG KLPSDHRQPP PPPPQMDAAG GIDSPRISGS 120 QSQPAAKPTP EKRRGPGSNS DKVLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL 180 TQLEQDLQRA RSQGLFLGGG GVASGSVSSG GAIFDMEYVR WLEDDHRHMS EIRTALQANL 240 SDGDLRLIMD GYIAHYDEIF RLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSDLIK 300 MLTPQLDPLT EQQIMGICAL QHSSQQAEEA LSQGLEQLHQ SLIDTIANGS VNDSMHHMAV 360 ALGKLANLEG FVRQADNLRQ QTLHNLHRLL TIRQAARCVL IIGEYYSRLR ALSSLWSSRP 420 RESLIADENS CQTTTDLQMV QSSHSQFSDY

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MERNQEGPAF DFGELEEAII LQGVKINNDD TKQPLYSAIR PSATLEMFPS WPMRFQQHTP  60
RGSSKSGEES TDSGSALNTL SNTPESPVSG KLPSDHRQPP PPPPQMDAAG GIDSPRISGS  120
QSQPAAKPTP EKRRGPGSNS DKVLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL  180
TQLEQDLQRA RSQGLFLGGG GVASGSVSSG GAIFDMEYVR WLEDDHRHMS EIRTALQANL  240
SDGDLRLIMD GYIAHYDEIF RLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSDLIK  300
MLTPQLDPLT EQQIMGICAL QHSSQQAEEA LSQGLEQLHQ SLIDTIANGS VNDSMHHMAV  360
ALGKLANLEG FVRQADNLRQ QTLHNLHRLL TIRQAARCVL IIGEYYSRLR ALSSLWSSRP  420
RESLIADENS CQTTTDLQMV QSSHSQFSDY

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552198.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A4D8ZWL6	0.0	A0A4D8ZWL6_SALSN; Transcription factor TGA
STRING	VIT_06s0080g00360.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]