PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100172060001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 332aa MW: 36892.8 Da PI: 6.3439

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100172060001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2e-14	147	193	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Ote100172060001\|100172060001 147 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 193 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-12	147	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-15	148	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-14	148	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.13E-5	157	196	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.5E-4	230	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MCXXXXXXXE NEENIHILTD NIEGFQIXXX XXXXXXXXXH HNTSTDAYIG LSGATFPEAS 60 QLLPWTLNPV HPFNPVHDPF LLPPPPPLFN RRGGLQFAYD GATSDHHLRF ISDSLHHGGA 120 APFGLHAELQ KMTAQEIMDA KALAASKSHS EAERRRRERI NNHLAKLRSL LPSTTKTDKA 180 SLLAEVIQHV KELKRQTSLI AETSPIPTEI DELSVDNEPD QDGKPVIKAS ICCEDRSDLL 240 PDLIKTLKAL RLRTVKAEIT TLGGRVKNVL FITGEDESNS CCSGDNGEQQ QHSISSIQEA 300 LKAVMEKSND ESGSSSVKRQ RTNINILEHR SL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077316.1	1e-160	transcription factor bHLH30
Swissprot	Q9S7Y1	3e-90	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A4D9B2H3	1e-152	A0A4D9B2H3_SALSN; Uncharacterized protein
STRING	cassava4.1_010668m	1e-134	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]