PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100170640031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 499aa    MW: 56200.3 Da    PI: 5.833
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100170640031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.64.7e-1101184951373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+ +s+++ ++ ++l +  +   s +g+p+qRla y++e+L ar  +s  +ly+ l+++++      + l+++
  Ote100170640031|100170640031 118 LKHLLFACAQSLSENNIHQFDKLAELARSAISINGEPFQRLACYVLEGLIARKESSAVNLYRPLNCNNK------DLLSYM 192
                                   689***************9998877777779************************99999988888776......599999 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                    +++ev+P+ kfs+++aN aI ea ++e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s   +  +l +
  Ote100170640031|100170640031 193 YTLYEVCPFWKFSYMAANGAIAEACKNEDCIHIIDFQIAQGTQWMTLLQALAERPSGAPRVRITGIDDPVSRyaRGASLAA 273
                                   9********************************************************************99999999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +ger +++ +++++p+ef+ +     ++++ ++L+v+p+EalaVn+ l lh+++desv++ ++rd +L++vkslsPkvv++
  Ote100170640031|100170640031 274 IGERFSEISKRFNIPVEFHGI-PVFSTEITAQMLDVRPDEALAVNFPLLLHHTPDESVDVYNPRDGLLRMVKSLSPKVVTL 353
                                   ********************5.67778899*************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysal......fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                   veqea++n++ Fl rf+e+l+yy           s+++  +r+ + r+ vEr++lgr+ivnv+aceg+er+erhe ++kWr
  Ote100170640031|100170640031 354 VEQEANTNTAAFLPRFMETLDYYXXXxxxxxxXXSIDVATARDGRGRVDVERHCLGRDIVNVIACEGKERVERHELFGKWR 434
                                   ***********************875111111568888899999************************************* PP

                          GRAS 317 erleeaGFkpvplsekaak.....qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   +r+++aGFk+++ls +          k ll+ ++++ y++ e++g+++l Wkdr+L+s+SaW
  Ote100170640031|100170640031 435 SRFMMAGFKQLNLSPYXXXxxxxxXXKGLLKGYSQH-YSLVEKDGAMLLAWKDRNLISASAW 495
                                   **************9876511111678899999955.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.00592477IPR005202Transcription factor GRAS
PfamPF035141.6E-107118495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MESECLAHGV SCAGLSYPYS PYSKNCHYYT HYDNLPSNSL DYPNFSHLQT SLTDGNYYVT  60
HALQELEAAL MAADDDDHLI LGETTTSTPQ FPHPQPSDFR FNSSNNAPMV ETASTSNLKH  120
LLFACAQSLS ENNIHQFDKL AELARSAISI NGEPFQRLAC YVLEGLIARK ESSAVNLYRP  180
LNCNNKDLLS YMYTLYEVCP FWKFSYMAAN GAIAEACKNE DCIHIIDFQI AQGTQWMTLL  240
QALAERPSGA PRVRITGIDD PVSRYARGAS LAAIGERFSE ISKRFNIPVE FHGIPVFSTE  300
ITAQMLDVRP DEALAVNFPL LLHHTPDESV DVYNPRDGLL RMVKSLSPKV VTLVEQEANT  360
NTAAFLPRFM ETLDYYXXXX XXXXXXXSID VATARDGRGR VDVERHCLGR DIVNVIACEG  420
KERVERHELF GKWRSRFMMA GFKQLNLSPY XXXXXXXXXX KGLLKGYSQH YSLVEKDGAM  480
LLAWKDRNLI SASAWDSAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-5514149524374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG11e-163CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1X9ITR40.0A0A1X9ITR4_POPTO; Uncharacterized protein
TrEMBLA0A291I3040.0A0A291I304_SALMI; GRAS2 transcription factor
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]