PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168890001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Dof

Protein Properties

Length: 430aa MW: 47219.8 Da PI: 4.9237

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168890001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	37.9	3.7e-12	168	215	26	62
zf-Dof 26 lsqPryfCkaCrryWtkGGa...........lrnvPvGggrrknkkss 62 ++qPr+fCk+C+ryWt+G vPvG+grrknk+s Ote100168890001\|100168890001 168 VNQPRHFCKNCQRYWTAGXXxxxxxxxxxxxXXXVPVGAGRRKNKNSA 215 89**************7522222222211457*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-7	168	212	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-6	168	213	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MSEVKDPRIK LFGKTIELPE TELAAAAEKA AEASQSCEAG GEESSIQDPP SSSDSMLEES 60 NWNGDADDRE SNKSQSCPEQ DDKDEGRAQP PTSEELKDSN TTILVVKEPK ALPANSDAEP 120 MQSSKTEEDQ TESNNSQEKI LKKPDKIIPX XXXXXXXXXX XXXXXXXVNQ PRHFCKNCQR 180 YWTAGXXXXX XXXXXXXXXX XVPVGAGRRK NKNSASQFRG VPDGLQNAPN GIHRPVLVQH 240 TLKNGFHEDD HSSRSSTTAA SSNDEVGKTG LPETIPNCHP FPPQMPCFPG APWPYPWHSV 300 QWTAPISSPN FALPFYSTPP PFWGCAVPGP WNPVSLDEEC DNENNPAKCL WVPKTLRIDD 360 PGEAAKSSIW ATLGIKNERI DDRGGLFKAF QSQSKGNKKA QTQAPAPESS TVLQANPAAL 420 SRSLSFHESS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MSEVKDPRIK LFGKTIELPE TELAAAAEKA AEASQSCEAG GEESSIQDPP SSSDSMLEES  60
NWNGDADDRE SNKSQSCPEQ DDKDEGRAQP PTSEELKDSN TTILVVKEPK ALPANSDAEP  120
MQSSKTEEDQ TESNNSQEKI LKKPDKIIPX XXXXXXXXXX XXXXXXXVNQ PRHFCKNCQR  180
YWTAGXXXXX XXXXXXXXXX XVPVGAGRRK NKNSASQFRG VPDGLQNAPN GIHRPVLVQH  240
TLKNGFHEDD HSSRSSTTAA SSNDEVGKTG LPETIPNCHP FPPQMPCFPG APWPYPWHSV  300
QWTAPISSPN FALPFYSTPP PFWGCAVPGP WNPVSLDEEC DNENNPAKCL WVPKTLRIDD  360
PGEAAKSSIW ATLGIKNERI DDRGGLFKAF QSQSKGNKKA QTQAPAPESS TVLQANPAAL  420
SRSLSFHESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085751.1	1e-155	cyclic dof factor 2-like
TrEMBL	A0A4D8Y8A3	1e-175	A0A4D8Y8A3_SALSN; Dof zinc finger protein DOF5.5
STRING	VIT_14s0108g00980.t01	1e-107	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122