PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168810061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12903.9 Da    PI: 10.6175
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168810061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-12851144
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                  k+ienk +r++tf+kRr+g++KK  E +   d  +a+i fs+ g
  Ote100168810061|100168810061  8 KPIENKAKRHTTFTKRRTGLIKKILEFCNKSDSTAAMIAFSKCG 51
                                  78***************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.913160IPR002100Transcription factor, MADS-box
CDDcd001201.18E-17159No hitNo description
SMARTSM004321.2E-12159IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-11222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-15263IPR002100Transcription factor, MADS-box
PfamPF003194.6E-131052IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-112237IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-113758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MRRKVEIKPI ENKAKRHTTF TKRRTGLIKK ILEFCNKSDS TAAMIAFSKC GNGYVLAHPH  60
IDGLGMQDLE QLFAEVKRLR LMVRKQKIAA ASMEEKSQSE SGNFGGESGG SFTGNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834242.12e-18PREDICTED: MADS-box transcription factor 17-like
TrEMBLA0A4D8ZYH41e-20A0A4D8ZYH4_SALSN; Uncharacterized protein
STRINGMigut.E01244.1.p7e-18(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625