PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168600071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 200aa MW: 22709.7 Da PI: 4.9057

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168600071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	34	79	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L + +P + kKl+Ka+ Le ++Y+k Lq Ote100168600071\|100168600071 34 HVMAERKRRENLSQLFISLSKAVPGL-----KKLDKASLLEDGINYLKTLQ 79 899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.227	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-15	33	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.57E-10	34	79	No hit	No description
Pfam	PF00010	1.2E-8	34	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-14	34	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-10	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDDSGSNDEY YADSSNQKRV SSSSTRTPAQ ALDHVMAERK RRENLSQLFI SLSKAVPGLK 60 KLDKASLLED GINYLKTLQE RVRVLEEEER RSSMDAAARE DSSPYNSEPD GPEIQARISD 120 RHVLIKIFCK KETGLMSRIP NEIMEKMQLN VVDMRIMPFG GTSLDISILA EMQGEFEVSV 180 KEIVDHLHTL FLNPKLYEDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854699.1	9e-58	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A4D9A0I5	8e-78	A0A4D9A0I5_SALSN; Uncharacterized protein
STRING	Migut.C01371.1.p	3e-57	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8864	16	28