PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168590071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 595aa    MW: 67039.6 Da    PI: 7.3508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168590071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.72.6e-562514301181
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+av++ d + ++ lLa++++++sp+gd m+Rla+yf +AL++rla++++ +y a++ ++ s    ++ l  +
  Ote100168590071|100168590071 251 LRSLLMQCAQAVATYDSRTVNDLLAKIRQHSSPHGDGMERLAHYFSRALESRLAGTGTATYIAFSNTRIS---AAQILRGY 328
                                   689****************************************************999999888777776...8999**** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++f +++P+  +s + aN++I + +++++++HiiDf+i +G+QWp+L+qaL++R++gpp+lRiTg++ p++g   +e++  
  Ote100168590071|100168590071 329 QTFIKACPFKIMSSFYANRTIQKLADSAHTLHIIDFGILYGFQWPCLIQALSERSGGPPMLRITGIDFPQPGfrPAERVAD 409
                                   ***********************************************************************9********* PP

                          GRAS 161 tgerLakfAeelgvpfefnvl 181
                                   tg+rLak +e++gvpfe+n +
  Ote100168590071|100168590071 410 TGRRLAKHCERFGVPFEYNNV 430
                                   ******************985 PP
2GRAS137.71.2e-42430591213374
                          GRAS 213 lldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                                   ++de+v  +s+rd+vL l+k+++P+++++   +  +n++ Fl+rf ea+ yys+lfd++ea+++re+ +r   E+e++g++
  Ote100168590071|100168590071 430 VPDETVVASSPRDAVLGLIKKINPDLFIHGVANGTYNTPFFLTRFREAMFYYSSLFDMFEATMSREDPNRLLFEEEVFGKD 510
                                   688999999************************************************************************ PP

                          GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ++n++aceg+er+ r et+++W+ r  +aGFk++pl++ ++  +   +++ + + ++v+e+ ++++ gWk+r + ++S+W+
  Ote100168590071|100168590071 511 ATNIIACEGTERVDRPETYKQWQVRNVRAGFKQMPLDQGIVRYVTNKVKRDYHKDFSVDEDGKWMLHGWKGRVIHAISCWK 591
                                   **************************************************99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.581225571IPR005202Transcription factor GRAS
PfamPF035148.8E-54251430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MNTLVQGYLS PAADDFQANY RSRSVYREED RRIMNGSSSD DSSLEDGTSP SEGWSPSSEG  60
ETPKEKDHAD AILKFINVML MEEEDLGNKP CMLHDSLALQ ATEKSLYDCL TNNDLPQTST  120
ATTSSEINTF LQSSWSDNLR DLQTPLPPLD ALTAPVNQSS KNIRKHRYSX XXXXXXXDYQ  180
RSNKQLANNG YESDPLEMFE DLLICSKACS PTISEAGQNE GKKKSPQSRV AGRGRPKGGK  240
KLGIVKEVVD LRSLLMQCAQ AVATYDSRTV NDLLAKIRQH SSPHGDGMER LAHYFSRALE  300
SRLAGTGTAT YIAFSNTRIS AAQILRGYQT FIKACPFKIM SSFYANRTIQ KLADSAHTLH  360
IIDFGILYGF QWPCLIQALS ERSGGPPMLR ITGIDFPQPG FRPAERVADT GRRLAKHCER  420
FGVPFEYNNV PDETVVASSP RDAVLGLIKK INPDLFIHGV ANGTYNTPFF LTRFREAMFY  480
YSSLFDMFEA TMSREDPNRL LFEEEVFGKD ATNIIACEGT ERVDRPETYK QWQVRNVRAG  540
FKQMPLDQGI VRYVTNKVKR DYHKDFSVDE DGKWMLHGWK GRVIHAISCW KPAHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4125759225380Protein SCARECROW
5b3h_A8e-4225759224379Protein SCARECROW
5b3h_D8e-4225759224379Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089500.10.0scarecrow-like protein 30
TrEMBLA0A4D9AM190.0A0A4D9AM19_SALSN; Uncharacterized protein
STRINGMigut.D02076.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191