PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168040081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 314aa    MW: 34303.7 Da    PI: 8.4549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168040081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-154493255
                                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY++ Lq
  Ote100168040081|100168040081 44 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIEYVQFLQ 93
                                  899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-2340114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1074292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-154497No hitNo description
PfamPF000107.1E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-124898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKSGKGPXXX XXXXXXXFGA KKDATSSANN SKDGKSSDKA NAIRSKHSVT EQRRRSKINE  60
RFQILRELIP HSDQKRDTAS FLLEVIEYVQ FLQEKVQKYE GSYQPWNSEP TKLMPWRNSH  120
WRVQNFVGQP QTTKNGSGPA SAFPGRFDET SPSTMQSSQP SPVEPDHIRD APGRPMDPHA  180
LPIPASMAND GAFSQALHGP LPSDMQSTEC PVTTDGMDRQ DELTIEGGTI SVSSAYSKGL  240
LTALTQALES TGVDLSQASI SVQINLGKRA NIGATPSMAK DHVIPTPSTN QPVGAYQDAT  300
TSEDVDLAHK RRKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847749.11e-137PREDICTED: transcription factor BIM2
SwissprotQ9CAA45e-95BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y91e-180A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01158.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]