PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168000211

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 610aa MW: 68469.9 Da PI: 4.6232

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168000211	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2e-52	15	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratks 80 ppGfrFhPtdeelv +yLk+k+ ++++ l +vi+e+d+yk++P++Lp +k+k+++++w+fFs+rd+ky++g r+nratk+ Ote100168000211\|100168000211 15 PPGFRFHPTDEELVLYYLKRKICSQRHLL-DVIAETDVYKWDPEELPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATKQ 94 9***********************777.9************6559999*********************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatgkd+ + + ++++vglkktLvfy+grapkg +tdWvmhey++ Ote100168000211\|100168000211 95 GYWKATGKDRVISC-GSRAVGLKKTLVFYRGRAPKGARTDWVMHEYTM 141 *********9.99***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-59	14	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	14	166	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MKVKSGGFGD GDIFPPGFRF HPTDEELVLY YLKRKICSQR HLLDVIAETD VYKWDPEELP 60 GLSKLKTGDR QWFFFSPRDR KYPNGARSNR ATKQGYWKAT GKDRVISCGS RAVGLKKTLV 120 FYRGRAPKGA RTDWVMHEYT MDEAELKRCQ TATEMEYYVL YKVYKKSGPG PKNGEQYGAP 180 FREEDWAGDE VEVQCPIEKE SVVNPVNEVT PVDSTNKADF QDLSSMAYFE EIMNQIADEP 240 LPVQPTFNDY GFNLEQFAGE EETHSSLFEN TWDISLPAPQ PFCQQTGVAT SFDLRQSGTS 300 QFHINEAPEV SSAPVADVPS SGDIDVAFLE DFLELNDLNP DSTSQNPDEL DNNADKFQFD 360 DLDCLHEHDL FQDAPLFLCD TGPAKSRQIS QPCMNSFRNE AVDPISNTFA SNIEDNASYM 420 LQQQFNNSNG ISYQLCADDQ SCSVVTYAQT NQEFIPPSTS GTGISGIPIE MDGMGRPCHL 480 QGGENSCAQM EVLHIKIKIM VLQIILPEQI KMEAEKRMMV VQTHGSPLLF GRLSSLYQQL 540 LLQLLKVLXV NMAFERMSSF SRVRVNASNL NIAASNALTS SRSSGKSRTG FIFMSLLGIL 600 CAILWLLIRS

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MKVKSGGFGD GDIFPPGFRF HPTDEELVLY YLKRKICSQR HLLDVIAETD VYKWDPEELP  60
GLSKLKTGDR QWFFFSPRDR KYPNGARSNR ATKQGYWKAT GKDRVISCGS RAVGLKKTLV  120
FYRGRAPKGA RTDWVMHEYT MDEAELKRCQ TATEMEYYVL YKVYKKSGPG PKNGEQYGAP  180
FREEDWAGDE VEVQCPIEKE SVVNPVNEVT PVDSTNKADF QDLSSMAYFE EIMNQIADEP  240
LPVQPTFNDY GFNLEQFAGE EETHSSLFEN TWDISLPAPQ PFCQQTGVAT SFDLRQSGTS  300
QFHINEAPEV SSAPVADVPS SGDIDVAFLE DFLELNDLNP DSTSQNPDEL DNNADKFQFD  360
DLDCLHEHDL FQDAPLFLCD TGPAKSRQIS QPCMNSFRNE AVDPISNTFA SNIEDNASYM  420
LQQQFNNSNG ISYQLCADDQ SCSVVTYAQT NQEFIPPSTS GTGISGIPIE MDGMGRPCHL  480
QGGENSCAQM EVLHIKIKIM VLQIILPEQI KMEAEKRMMV VQTHGSPLLF GRLSSLYQQL  540
LLQLLKVLXV NMAFERMSSF SRVRVNASNL NIAASNALTS SRSSGKSRTG FIFMSLLGIL  600
CAILWLLIRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-50	14	141	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074131.1	0.0	NAC domain-containing protein 17-like
TrEMBL	A0A2G9I6C6	0.0	A0A2G9I6C6_9LAMI; Uncharacterized protein
STRING	XP_009613291.1	1e-177	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3212	24	51