PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100166400071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10194.2 Da PI: 4.8435 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9e-10 | 6 | 53 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W+ +E +++ da + + ++ +W ar +g g+t +++k ++q++ Ote100166400071|100166400071 6 SWSVQENKRFEDALAVHDKEtpeRWQNLARAVGGGKTVEDVKCHYQSL 53 7*****************99**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.2E-6 | 3 | 56 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.051 | 5 | 54 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.4E-11 | 5 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MGSSSSWSVQ ENKRFEDALA VHDKETPERW QNLARAVGGG KTVEDVKCHY QSLVEDIELI 60 ESGKVPLPKY KSITKDNTTL NDQQQSEAST Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-27 | 2 | 72 | 6 | 75 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083676.1 | 5e-35 | protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 1e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1S4B6C6 | 4e-32 | A0A1S4B6C6_TOBAC; protein RADIALIS-like 5 | ||||
STRING | XP_009586717.1 | 6e-33 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |