PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100166350161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 606aa    MW: 67263.9 Da    PI: 4.6457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100166350161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-5291371128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lp+G+rF+Ptdeel+++yLk k+++++ e+ +vi+e+d++k+ePwdLp  + v+++++ew+fF+++d+ky++g+r nrat+
  Ote100166350161|100166350161   9 LPVGYRFRPTDEELIDHYLKLKINRRDKEV-SVIREIDVCKWEPWDLPdlSVVESTDNEWFFFCPKDRKYQNGQRLNRATE 88 
                                   799************************999.99**************96447888999*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWkatgkd+++ ++kg+++g+kktLvfy grap+g++t+Wv+heyr+
  Ote100166350161|100166350161  89 KGYWKATGKDRNINTRKGTKIGMKKTLVFYLGRAPDGKRTNWVIHEYRA 137
                                   ***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-584160IPR003441NAC domain
PROSITE profilePS5100555.4449160IPR003441NAC domain
PfamPF023658.5E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAVLPVKALP VGYRFRPTDE ELIDHYLKLK INRRDKEVSV IREIDVCKWE PWDLPDLSVV  60
ESTDNEWFFF CPKDRKYQNG QRLNRATEKG YWKATGKDRN INTRKGTKIG MKKTLVFYLG  120
RAPDGKRTNW VIHEYRATDK SLDGTHPGQG AYVLCRLFKK TELKQDEIGE SSTINEAEEI  180
VSTSPAEVRF PTEEEQSESL SPSLGGTAEL QPSVESHQAL GCEKDAAGTP VPFDWQSLSN  240
IADEMEDAVL DTKSIPPNPE LEKLLEEFYP HLQQTADCKM FSPLHSQMQL ELGNPYLYNS  300
LTGDMNGNQQ NIPFPYGTNA TDDIENFLSS VFIEPEEQSV ASIHNDVKYI NSLGRDSNSC  360
SESEGEVSQK QEQFILQAGL FDDNIKQESQ FQSEVSFEMP GLEQDGHNSY VSSGYDQGNL  420
GSATNFGGLR NDFSTVSSAN HMPHMSNVEK ADDTAVEDSA SGTGIIIRKR QLPNQSSVQS  480
FAAHGTAPRR IHLQKKLQVG PVQCGLPMES NNPKITLDGE SAQEEKGANV VAPVESKAST  540
SDDANTDEIS NPLKATADSP YKKTEDIPSA RSACALSVSS LRYMPKVLVA VSLMVMLVSI  600
WAYSTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-43816016165NO APICAL MERISTEM PROTEIN
1ut4_B3e-43816016165NO APICAL MERISTEM PROTEIN
1ut7_A3e-43816016165NO APICAL MERISTEM PROTEIN
1ut7_B3e-43816016165NO APICAL MERISTEM PROTEIN
3swm_A3e-43816019168NAC domain-containing protein 19
3swm_B3e-43816019168NAC domain-containing protein 19
3swm_C3e-43816019168NAC domain-containing protein 19
3swm_D3e-43816019168NAC domain-containing protein 19
3swp_A3e-43816019168NAC domain-containing protein 19
3swp_B3e-43816019168NAC domain-containing protein 19
3swp_C3e-43816019168NAC domain-containing protein 19
3swp_D3e-43816019168NAC domain-containing protein 19
4dul_A3e-43816016165NAC domain-containing protein 19
4dul_B3e-43816016165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.10.0NAC domain-containing protein 62
TrEMBLA0A2G9G0M40.0A0A2G9G0M4_9LAMI; Uncharacterized protein
STRINGMigut.F00136.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448