PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100165440111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29205.1 Da    PI: 6.3189
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100165440111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.1e-28959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+ien+++rqvtfskRr g++KK +ELSvLCda++a+i+fs++gkl ey++
  Ote100165440111|100165440111  9 KKIENNTRRQVTFSKRRSGLMKKTHELSVLCDAQIALIVFSTKGKLTEYCT 59
                                  68***********************************************96 PP
2K-box35.83.5e-13891701095
                         K-box  10 eeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   ++a   + q+ela++k+e+ nL+ + + +++G+dL+ L ++eL qLe+qLe+sl+     K +l+ eq+e+l++ e  +++
  Ote100165440111|100165440111  89 SSAYDDQVQKELARMKNETLNLElSLIQRYKGDDLSGLHFEELTQLEHQLEQSLQ-----KFQLIQEQLENLKRTEVLMEK 164
                                   45556789***************98899**************************5.....89******************* PP

                         K-box  90 enkaLr 95 
                                   en+++ 
  Ote100165440111|100165440111 165 ENQEMY 170
                                   **9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
CDDcd002651.05E-40276No hitNo description
SuperFamilySSF554552.09E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-1093172IPR002487Transcription factor, K-box
PROSITE profilePS5129710.62693207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGKIEVKK IENNTRRQVT FSKRRSGLMK KTHELSVLCD AQIALIVFST KGKLTEYCTP  60
SYTTKQIIDR YVKAKGISIP EYDHRAGSSS AYDDQVQKEL ARMKNETLNL ELSLIQRYKG  120
DDLSGLHFEE LTQLEHQLEQ SLQKFQLIQE QLENLKRTEV LMEKENQEMY HWLMSNQAQK  180
EAAEMEREQQ QQQEAMTELK LVEQQPLMNQ FSFFGEDLQL GTLAAFQTHT FRLQPSHPNL  240
QDPLPHSASI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16159159MEF2C
5f28_B3e-16159159MEF2C
5f28_C3e-16159159MEF2C
5f28_D3e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.11e-125PREDICTED: MADS-box protein defh21
SwissprotQ8RVL41e-116DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A4D8Y7941e-113A0A4D8Y794_SALSN; MADS-box transcription factor, plant
STRINGMigut.C01064.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625