PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100164310021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 295aa MW: 32677.8 Da PI: 6.829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100164310021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.6	5.4e-28	47	181	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp + + +k +t+ Ote100164310021\|100164310021 47 LPAGVKFDPTDQELI-EHLEAKVEGKDskshplIDEFIpTIEGEdGICYTHPEKLPGLFVPTPPAXXXXXXXXRKIQTECD 126 799**********.99****96665443333333666646******5333333344455555555555444 PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Ote100164310021\|100164310021 127 LQQ-GGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 181 444.35677********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-31	43	200	IPR003441	NAC domain
PROSITE profile	PS51005	26.168	47	200	IPR003441	NAC domain
Pfam	PF02365	1.8E-14	48	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNKNNQLGSV SSSDLIDAKL EEHQLCGSKH CPGCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 IEHLEAKVEG KDSKSHPLID EFIPTIEGED GICYTHPEKL PGLFVPTPPA XXXXXXXXRK 120 IQTECDLQQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE KTNWVMHQYH 180 LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSE RSGAAISSCV AGDVIAGDAS MRRESGSGSC 240 SSSKEMMPQR DDYSAASVSI SGGVAPIPNY AGIDIHQLKA DHFGYLPFRK AFDHE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549347.1	1e-157	uncharacterized protein LOC105162027 isoform X3
Swissprot	Q9M0F8	1e-121	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2Z7BSZ3	1e-159	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	Gorai.010G078900.1	1e-153	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]