PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100164310011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 280aa MW: 30908.7 Da PI: 6.3888

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100164310011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	50.2	8.5e-16	47	151	1	95
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+ Ote100164310011\|100164310011 47 LPAGVKFDPTDQELI-EHLEAKVEGKDskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTX 125 799**********.99****96665443333333666646******.555666799**********996 PP NAM 74 knratk....sgyWkatgkdkevlsk 95 +g+ +t + +v + Ote100164310011\|100164310011 126 XXXXXXeknpNGMRPSTRRRDTVAQD 151 55431112235665566555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-13	43	127	IPR003441	NAC domain
PROSITE profile	PS51005	11.08	47	212	IPR003441	NAC domain
Pfam	PF02365	7.8E-6	48	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MNKNNQLGSV SSSDLIDAKL EEHQLCGSKH CPGCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 IEHLEAKVEG KDSKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSK HFFHRPSKAY 120 TTGTXXXXXX XEKNPNGMRP STRRRDTVAQ DRQDAAGQHE EEKEGELVVS KIFYQTQPRQ 180 CNWSERSGAA ISSCVAGDVI AGDASMRRES GSGSCSSSKE MMPQRDDYSA ASVSISGGVA 240 PIPNYAGIDI HQLKADHFGY LPFRKAFDHE VYHIPFHLFK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012974.2	1e-116	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_017981926.1	1e-116	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_017981927.1	1e-116	PREDICTED: NAC domain-containing protein 73 isoform X2
Refseq	XP_020549347.1	1e-117	uncharacterized protein LOC105162027 isoform X3
Swissprot	Q9M0F8	4e-88	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2Z7BSZ3	1e-121	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	EOY30594	1e-115	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]