PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100163840001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 170aa    MW: 19853 Da    PI: 9.7015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100163840001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17453148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                                  r+rW +eEd ll d+vkq+G++ W++I+ +mg  + R +k+c +rw +yl
  Ote100163840001|100163840001  4 RQRWQPEEDNLLRDYVKQYGPREWNLISIRMGktLDRDPKSCLERWKNYL 53
                                  89**********************************************97 PP
2Myb_DNA-binding26.31.7e-085991135
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                                  +g+ T++E+ l + + +++G++ Wk+Ia++++ gR
  Ote100163840001|100163840001 59 KGSLTADEQNLVISLQAKYGNK-WKKIAAELP-GR 91
                                  6788******************.*********.99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.776157IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-17256IPR009057Homeodomain-like
SMARTSM007171.5E-13355IPR001005SANT/Myb domain
PfamPF002491.3E-14453IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-22492IPR009057Homeodomain-like
CDDcd001676.87E-11653No hitNo description
PROSITE profilePS500906.91154104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-135792IPR009057Homeodomain-like
SMARTSM007172.658106IPR001005SANT/Myb domain
PfamPF002493.3E-75991IPR001005SANT/Myb domain
CDDcd001677.11E-56391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKDRQRWQPE EDNLLRDYVK QYGPREWNLI SIRMGKTLDR DPKSCLERWK NYLKPGIKKG  60
SLTADEQNLV ISLQAKYGNK WKKIAAELPG RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXDYGA SPSPEKPAQG KYDHILDTFA EKYVQPKLLS FQPPPVLCTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-147911091B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870611.19e-64transcription factor AS1-like
SwissprotQ9S7B23e-45RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A059PRT38e-70A0A059PRT3_SALMI; MYB-related transcription factor
STRINGXP_009784773.18e-62(Nicotiana sylvestris)
STRINGXP_009630091.19e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29332445