PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100163760071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | FAR1 | ||||||||
Protein Properties | Length: 418aa MW: 47204.9 Da PI: 8.3861 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.9 | 1e-10 | 78 | 115 | 52 | 89 |
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 t++++rtgC a +kv+k ++gkw ++++++eHnHe+ Ote100163760071|100163760071 78 YATQTSSRTGCPAFIKVQKVDTGKWSIASIKKEHNHEV 115 458999******************************97 PP | |||||||
2 | FAR1 | 69.5 | 8.1e-22 | 192 | 266 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 kfY++YA+++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++++++ g+w+v++l Ote100163760071|100163760071 192 KFYQTYASNMGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQDAGRWVVDRL 258 6**************************************9998..............4899******************** PP FAR1 82 eleHnHel 89 ++eHnH+l Ote100163760071|100163760071 259 QKEHNHAL 266 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-8 | 76 | 115 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.4E-17 | 192 | 266 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MLIVGNRDIF RVTALRILVS DMNREALGPI MTVRTKPAAL VVGKSNGHHE IEEESKMEPH 60 VGLEFNTAEE AQEFYSVYAT QTSSRTGCPA FIKVQKVDTG KWSIASIKKE HNHEVEASGE 120 ICPPRIQRKT LPTPRSSAGG ASRTGIRSHE DDSPSGLVDT KRLKKEEMIA VGGHSSEPHK 180 GLEFSSANDA YKFYQTYASN MGFRIRIGQL FRSKHDGSIT SRRFVCSKEG HQHPSRVGCG 240 AYMRIQRQDA GRWVVDRLQK EHNHALGSPL DPNCTANVTP KACREEGGSV LENLDLVETN 300 GGLSLIKRVR ESRVENDWYS VLLEYFQSRQ AEETGFFYAV EMREGKGTNI FWADARARFS 360 CAQFGDAIVF DTTYRRXXXX XLREEARNYI EAGTASLERY KLAFEIMQEG RRNFCWQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090829.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
Swissprot | Q9M8J3 | 1e-107 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A2G9HD95 | 0.0 | A0A2G9HD95_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00138.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7347 | 21 | 30 |
Publications ? help Back to Top | |||
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