PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100163760031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 531aa MW: 59905.1 Da PI: 8.4657

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100163760031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.5	1.4e-10	78	115	52	89
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 t++++rtgC a +kv+k ++gkw ++++++eHnHe+ Ote100163760031\|100163760031 78 YATQTSSRTGCPAFIKVQKVDTGKWSIASIKKEHNHEV 115 458999******************************97 PP
2	FAR1	69.1	1.1e-21	192	266	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 kfY++YA+++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++++++ g+w+v++l Ote100163760031\|100163760031 192 KFYQTYASNMGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQDAGRWVVDRL 258 6************************************9998..............4899**************** PP FAR1 82 eleHnHel 89 ++eHnH+l Ote100163760031\|100163760031 259 QKEHNHAL 266 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-7	76	115	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.0E-17	192	266	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MLIVGNRDIF RVTALRILVS DMNREALGPI MTVRTKPAAL VVGKSNGHHE IEEESKMEPH 60 VGLEFNTAEE AQEFYSVYAT QTSSRTGCPA FIKVQKVDTG KWSIASIKKE HNHEVEASGE 120 ICPPRIQRKT LPTPRSSAGG ASRTGIRSHE DDSPSGLVDT KRLKKEEMIA VGGHSSEPHK 180 GLEFSSANDA YKFYQTYASN MGFRIRIGQL FRSKHDGSIT SRRFVCSKEG HQHPSRVGCG 240 AYMRIQRQDA GRWVVDRLQK EHNHALGSPL DPNCTANVTP KACREEGGSV LENLDLVETN 300 GGLSLIKRVR ESRVENDWYS VLLEYFQSRQ AEETGFFYAV EMREGKGTNI FWADARARFS 360 CAQFGDAIVF DTTYRRDPIE EQCRKLYTMT MFKVFQKELL DCYNYVGTKV NVEGAISRYL 420 AHIEGLPNNE HKGASISLYL APVEIIVLPR VQNLLCAVVH LLFHFQHLDS FLWSRISTFF 480 PIFFNTLAGS ILPVTTTLSF IKSVVNILSP VPPCQPHFRT RHYNAWGPSY F

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MLIVGNRDIF RVTALRILVS DMNREALGPI MTVRTKPAAL VVGKSNGHHE IEEESKMEPH  60
VGLEFNTAEE AQEFYSVYAT QTSSRTGCPA FIKVQKVDTG KWSIASIKKE HNHEVEASGE  120
ICPPRIQRKT LPTPRSSAGG ASRTGIRSHE DDSPSGLVDT KRLKKEEMIA VGGHSSEPHK  180
GLEFSSANDA YKFYQTYASN MGFRIRIGQL FRSKHDGSIT SRRFVCSKEG HQHPSRVGCG  240
AYMRIQRQDA GRWVVDRLQK EHNHALGSPL DPNCTANVTP KACREEGGSV LENLDLVETN  300
GGLSLIKRVR ESRVENDWYS VLLEYFQSRQ AEETGFFYAV EMREGKGTNI FWADARARFS  360
CAQFGDAIVF DTTYRRDPIE EQCRKLYTMT MFKVFQKELL DCYNYVGTKV NVEGAISRYL  420
AHIEGLPNNE HKGASISLYL APVEIIVLPR VQNLLCAVVH LLFHFQHLDS FLWSRISTFF  480
PIFFNTLAGS ILPVTTTLSF IKSVVNILSP VPPCQPHFRT RHYNAWGPSY F

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090829.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	1e-105	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]