PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100163030011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | FAR1 | ||||||||
Protein Properties | Length: 570aa MW: 65469.6 Da PI: 7.4153 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.1 | 2.2e-21 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+ Ote100163030011|100163030011 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNDNKPQRNRKSSRCGCQAYMRISKSTelgVPEWR 142 6**************9998877356667999***************999**********************99777789** PP FAR1 78 vtkleleHnHela 90 vt + ++HnHel Ote100163030011|100163030011 143 VTGFANHHNHELL 155 ***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-18 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-19 | 278 | 366 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MSEEAGQMML VYEDPSEQRS ISLDDASSTE ESPDETRLSL ETTNDAIPYI GQRFVTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSND NKPQRNRKSS 120 RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF 180 VKTGISVQQM MRLLELEKCI EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIKD 240 KDPNFEFEFT LDSNGRLENI SWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN 300 NYGMPCFFGC VLLREENLRS FSWALKVFLG FMNGKAPQTI LTDQNMCLKE AIGMEMPTSK 360 HALCIWLTVG KFPSWFNAVL GERYNEWKAE FYRLYNLEMI EDFELGWRDM VNSFGLHTNR 420 HIASLYALRN LWALPYLRSH FFAGLTTHGQ SKSINAFIQR FLSAQTRLAH FVEQVSFLAK 480 LHANYTNLST VLLIHHQVAV AVDFKDQAGE QQTMQQNIQN ISLKTGAPME SHAASXXXXX 540 XXXXXXPSQS SKNSSSWLPT TLPTRWKTVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087634.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A4D8ZTR8 | 0.0 | A0A4D8ZTR8_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_002947m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7183 | 7 | 22 |
Publications ? help Back to Top | |||
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