PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100163030001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family FAR1
Protein Properties Length: 578aa    MW: 66893.9 Da    PI: 7.0254
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100163030001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.12.2e-2162155190
                          FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 
                                   +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+
  Ote100163030001|100163030001  62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNDNKPQRNRKSSRCGCQAYMRISKSTelgVPEWR 142
                                   6**************9998877356667999***************999**********************99777789** PP

                          FAR1  78 vtkleleHnHela 90 
                                   vt + ++HnHel 
  Ote100163030001|100163030001 143 VTGFANHHNHELL 155
                                   ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1862155IPR004330FAR1 DNA binding domain
PfamPF105512.6E-19278366IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSEEAGQMML VYEDPSEQRS ISLDDASSTE ESPDETRLSL ETTNDAIPYI GQRFVTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSND NKPQRNRKSS  120
RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF  180
VKTGISVQQM MRLLELEKCI EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIKD  240
KDPNFEFEFT LDSNGRLENI SWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREENLRS FSWALKVFLG FMNGKAPQTI LTDQNMCLKE AIGMEMPTSK  360
HALCIWLTVG KFPSWFNAVL GERYNEWKAE FYRLYNLEMI EDFELGWRDM VNSFGLHTNR  420
HIASLYALRN LWALPYLRSH FFAGLTTHGQ SKSINAFIQR FLSAQTRLAH FVEQKQKSYP  480
PHRVVNELSQ VEYDQARPHV AVAVDFKDQA GEQQTMQQNI QNISLKTEQL VMAAHYASYQ  540
MEDGFLVRHH TKLEGGRKVY WSPREGIISC SCHQFEFS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087634.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G9GVP80.0A0A2G9GVP8_9LAMI; Uncharacterized protein
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]