PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100162330031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

BBR-BPC

Protein Properties

Length: 318aa MW: 35652.2 Da PI: 9.8943

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100162330031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	294.5	4.4e-90	1	318	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki...............rernlalsekkaavaerd....... 57 md +g+++ rn+g+ +p+ + ++++lglql+ +ae+ + + Ote100162330031\|100162330031 1 MDGNGNMNfRNWGFLDPQtSDIRNHLGLQLIPPMAEKPLFGggsgsasgfrehqhvH--------------PSPvmssing 67 999***********99899*********98876556656566654322222..............2222333334 PP GAGA_bind 58 .............maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse....pqled 121 f + d +l++ ++k+l++++ +++ +++v+++t+s++s+ + Ote100162330031\|100162330031 68 gpfhhhrvggiseSPF-HVDYWLNQ-------NREKYLNVMPGNHQPP-YYQLSYGVSPETSSTHSVXXXXXxxxxXXXXE 139 4444445799985555.89999.......6789999999877644.44477899999999999988555566666667 PP GAGA_bind 122 savelreeeklealpieeaaeeakekkkkkkrqrak.kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngv 201 + v ee ++e+ kkr ++k ++ ++k+kk++ +++ k++ ++s +r++a+kk ++ +ngv Ote100162330031\|100162330031 140 NVVSELEEVCNEKXXXXXXXXXXXXXXXXKKRDSNKvSTCTPKEKKPRTRTPRVPKEELTPS--NRARAPKKRAEIIINGV 218 77776677777777766666666666665555555514556677777776666656666666..79************ PP GAGA_bind 202 slDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282 ++D+s +P+P+CsCtGa++qCY+WG+GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekL +eGyd+s+p Ote100162330031\|100162330031 219 NMDISDIPIPICSCTGAPQQCYRWGSGGWQSACCTTGLSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLGSEGYDFSHP 299 ***************************************************************************** PP GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301 +DLk+hWAkHGtnkfvtir Ote100162330031\|100162330031 300 IDLKSHWAKHGTNKFVTIR 318 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.6E-121	1	318	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.9E-92	1	318	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDGNGNMNFR NWGFLDPQTS DIRNHLGLQL IPPMAEKPLF GGGSGSASGF REHQHVHPSP 60 VMSSINGGPF HHHRVGGISE SPFHVDYWLN QNREKYLNVM PGNHQPPYYQ LSYGVSPETS 120 STHSVXXXXX XXXXXXXXEN VVSELEEVCN EKXXXXXXXX XXXXXXXXKK RDSNKVSTCT 180 PKEKKPRTRT PRVPKEELTP SNRARAPKKR AEIIINGVNM DISDIPIPIC SCTGAPQQCY 240 RWGSGGWQSA CCTTGLSIYP LPMSTKRRGA RIAGRKMSIG AFKKVLEKLG SEGYDFSHPI 300 DLKSHWAKHG TNKFVTIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083223.1	1e-151	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2G9HQ94	1e-155	A0A2G9HQ94_9LAMI; Uncharacterized protein
STRING	XP_009761371.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26