PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100162300011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 290aa MW: 33154.3 Da PI: 7.5981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100162300011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.7	2.2e-27	21	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atks 80 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePw+++ n +++ Ote100162300011\|100162300011 21 VPPGFRFHPTEEELLHYYLRKKVACQKIDL-DVIRDVDLNKLEPWEIQGXXXXXXX-----XXXXXXXXXXXXXNVmFVEK 95 69**************************.9***********833222111.....22222222222222212332 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + g++ + + + + +g++ktLvfy grap+g+k+dW+mheyrl Ote100162300011\|100162300011 96 ---CKIGSTPQNDC-NFRRIGMRKTLVFYGGRAPHGQKSDWIMHEYRL 139 ...24455444444.6678*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-16	17	70	IPR003441	NAC domain
PROSITE profile	PS51005	31.335	21	174	IPR003441	NAC domain
Pfam	PF02365	6.5E-16	22	139	IPR003441	NAC domain
SuperFamily	SSF101941	8.24E-16	108	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSSSSLSHED MNLSLNGNSK VPPGFRFHPT EEELLHYYLR KKVACQKIDL DVIRDVDLNK 60 LEPWEIQGXX XXXXXXXXXX XXXXXXXXNV MFVEKCKIGS TPQNDCNFRR IGMRKTLVFY 120 GGRAPHGQKS DWIMHEYRLD DNTTPHDSTN VPSFAXXXXX XXXEGWVVCR VFKKKNYHKA 180 LESPLTSSPS IMSNNLARND GVLDQLIMFT GRNSSSSSSC KQENDPTTNF TNQSTGFLHL 240 PELESPMTTN HTNSNDELIP SSXXXXXXXX XXXXXXXXQR PSAQAVFRLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070696.1	1e-102	NAC domain-containing protein 43
Swissprot	Q84WP6	5e-67	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A2G9GSV0	6e-86	A0A2G9GSV0_9LAMI; Uncharacterized protein
STRING	XP_008346654.1	6e-80	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]