PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100161860021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 241aa MW: 27442.3 Da PI: 5.6652 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 169 | 203 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Ote100161860021|100161860021 169 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 203 569*****************************885 PP | |||||||
2 | ELK | 41.8 | 2.2e-14 | 123 | 144 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Ote100161860021|100161860021 123 ELKGQLLRKYSGYLGSLKQEFM 144 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 1.5E-26 | 26 | 77 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-21 | 30 | 76 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.6E-11 | 123 | 144 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 123 | 144 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 123 | 143 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 143 | 206 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-20 | 145 | 220 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.4E-13 | 145 | 210 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 148 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-12 | 155 | 207 | No hit | No description |
Pfam | PF05920 | 3.6E-17 | 163 | 202 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 181 | 204 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAIGAPPEVV AKLEEACASA AVNRHGTSCV GEDPALDQFM EAYCEMLTKY EQELSKPFKE 60 AMLFLSRIEC QFKALTLSPS TSAGILHQDI ATACMDAMET NGSSEEDVDV NNSFIDPQAE 120 DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSESQKLA 180 LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDAAHP HYYMDNVLGN PFPMDISPAL 240 L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087316.1 | 1e-146 | homeobox protein knotted-1-like LET6 isoform X1 | ||||
Refseq | XP_027089410.1 | 1e-146 | homeobox protein knotted-1-like LET6 isoform X1 | ||||
Swissprot | O22299 | 1e-132 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A4D8Z0N2 | 1e-147 | A0A4D8Z0N2_SALSN; Uncharacterized protein | ||||
STRING | VIT_10s0116g00190.t01 | 1e-140 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 |