PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100161550091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 347aa    MW: 38983.8 Da    PI: 7.0677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100161550091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-1390130748
                                   HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    Ed ll+++v  +G + W+ Ia+ ++ gR +kqc++rw+++l
  Ote100161550091|100161550091  90 SEDGLLIELVGAFGEKKWSEIAEQLP-GRMGKQCRERWYNHL 130
                                   5999**********************.*************97 PP
2Myb_DNA-binding54.33.1e-17138178345
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   +WT+eE+ +l++a++++G++ W+  a+ ++ gRt++++k++w+
  Ote100161550091|100161550091 138 AWTEEEERILINAHAEYGNK-WSILAKLLP-GRTENSVKNHWN 178
                                   8*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7483130IPR017930Myb domain
SMARTSM007171.3E-1183132IPR001005SANT/Myb domain
CDDcd001675.98E-1189130No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2490137IPR009057Homeodomain-like
PfamPF002494.1E-1290130IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-29109185IPR009057Homeodomain-like
PROSITE profilePS5129425.428131185IPR017930Myb domain
SMARTSM007171.1E-16135183IPR001005SANT/Myb domain
PfamPF002491.8E-15137178IPR001005SANT/Myb domain
CDDcd001671.39E-12138178No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22138185IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEANCCKIE AEKEDGKSNR AVDADNDVDK PISVHGNLRR LSVPTRRSSK AKWTVEEVIS  60
AEDEILRDAV QKYEGSRLPL GSVGCAMLAS EDGLLIELVG AFGEKKWSEI AEQLPGRMGK  120
QCRERWYNHL KPEINKAAWT EEEERILINA HAEYGNKWSI LAKLLPGRTE NSVKNHWNCS  180
LKKRLFTHSS LPPQPNNRGA NQDSTEVNQT QNHGTTKTQT QGFTRVDDGD KASPSSECSY  240
TGLWYVPIQR EDENILLCSG KFPIKEAWDS YSITRAILRS AASSYRNMPS IIRRRAFRLL  300
QKGSDEGVGP LNGGDDAKKV DDEDRVRTCV FLSQMSEGFK SLQPLNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-379118714110B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094689.27e-58transcription factor MYB3R-5
TrEMBLA0A4D8XZ901e-80A0A4D8XZ90_SALSN; Uncharacterized protein
STRINGevm.model.supercontig_18.2086e-50(Carica papaya)