PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100159130031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 198aa MW: 21272.7 Da PI: 6.4954 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.4 | 4.9e-13 | 59 | 85 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Ote100159130031|100159130031 59 PGQPECQFYMKTGDCKFGAVCKFHHPK 85 5789*********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.1e-13 | 105 | 131 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Ote100159130031|100159130031 105 PGEPLCVFYSRYGICKFGPSCKFDHPM 131 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.2E-6 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 64 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 109 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
GQLGSVLSSE NQPHSAGSIQ NDGVSPQGDS GNMASEFYSG SVPMGYYAFQ KDNVFPERPG 60 QPECQFYMKT GDCKFGAVCK FHHPKERLIP VPDCLLSPIG LPLRPGEPLC VFYSRYGICK 120 FGPSCKFDHP MGVFAYNTPA SSSTDSTGIH RLLASSSGTV ALNLSQDGLV EAGSTNNRRH 180 SLSEARQKSL GDNNTDSE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551199.1 | 1e-111 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 2e-84 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A4D8YTJ6 | 1e-112 | A0A4D8YTJ6_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D8Z5R4 | 1e-111 | A0A4D8Z5R4_SALSN; Uncharacterized protein | ||||
STRING | Migut.F01877.1.p | 1e-109 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |