PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100158750081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 191aa    MW: 21602.2 Da    PI: 9.8269
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100158750081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-1686137155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100158750081|100158750081  86 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 137
                                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0062257IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-72353IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-72452IPR001471AP2/ERF domain
PROSITE profilePS510328.9392451IPR001471AP2/ERF domain
CDDcd000188.28E-1286145No hitNo description
SuperFamilySSF541711.44E-1886146IPR016177DNA-binding domain
PfamPF008475.2E-1186137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1987145IPR001471AP2/ERF domain
PROSITE profilePS5103219.20387145IPR001471AP2/ERF domain
SMARTSM003803.2E-3187151IPR001471AP2/ERF domain
PRINTSPR003674.6E-58899IPR001471AP2/ERF domain
PRINTSPR003674.6E-5127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNHGRVDVAE NVDNMLQFTL VSGYDKEDKA ARAYDLAALK YWGPTATTNF PISNYSKELE  60
EMKHMTKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT  120
EEEAAEAYDI AAIKFRGMNA VTNFEMNRYD VEAIAKSPLP IGGTAKKLKI SXXXXXXXXX  180
XXXXXXXXQQ H
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123293.18e-96AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6PQQ32e-87AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A200PUI02e-93A0A200PUI0_9MAGN; AP2/ERF domain
STRINGAquca_010_00266.14e-92(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]