PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100157660021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 417aa MW: 45993.1 Da PI: 6.376

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100157660021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.3e-18	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ r+ g+ R++k+c++rw ++l Ote100157660021\|100157660021 36 KGPWTSAEDAILVEYVTKHGEGNWNAVQRHTGLARCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	53.7	4.6e-17	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ ++G++ W++ a++m+ gRt++++k++w++ Ote100157660021\|100157660021 89 KGAFTPEEEHLIIELHSKMGNK-WARMAAEMP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.881	31	83	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-31	33	130	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-13	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-15	36	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	37	90	IPR009057	Homeodomain-like
CDD	cd00167	3.76E-11	38	83	No hit	No description
PROSITE profile	PS51294	25.98	84	138	IPR017930	Myb domain
SMART	SM00717	1.5E-15	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-16	89	132	IPR001005	SANT/Myb domain
CDD	cd00167	1.73E-11	91	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.7E-26	91	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009723	Biological Process	response to ethylene
GO:0009751	Biological Process	response to salicylic acid
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045926	Biological Process	negative regulation of growth
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MCMTSGTDGV MMPNNGMKSP PTEESNSVGG NGRLKKGPWT SAEDAILVEY VTKHGEGNWN 60 AVQRHTGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEHLI IELHSKMGNK WARMAAEMPG 120 RTDNEIKNYW NTRIKRRQRA GLPIYPPDIC LQSFNENQHT GDMNTFSSSG DAHSHDATPV 180 NNFEIPAVQF KSLELNQHMY PPAFLDMPSG GFLAIPASGF MLHSQPKNFM VSTMHPAKRH 240 RGPESVFPVP DQYQIGSYVQ NAQAFTYSSS AYDDNSSFNH LSSSTVLAGS HAVINGNPSS 300 SSSELIWAME EELPSLQTQA DNWGSPSSPL PPLESADTEH KPSCKISSQN SGLLEEVLHQ 360 SQTMDGSSQF INEMGWEPHW ELTSPLGHSS SSMFSQGNGE HKAITGYRTI SNNEMQG

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MCMTSGTDGV MMPNNGMKSP PTEESNSVGG NGRLKKGPWT SAEDAILVEY VTKHGEGNWN  60
AVQRHTGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEHLI IELHSKMGNK WARMAAEMPG  120
RTDNEIKNYW NTRIKRRQRA GLPIYPPDIC LQSFNENQHT GDMNTFSSSG DAHSHDATPV  180
NNFEIPAVQF KSLELNQHMY PPAFLDMPSG GFLAIPASGF MLHSQPKNFM VSTMHPAKRH  240
RGPESVFPVP DQYQIGSYVQ NAQAFTYSSS AYDDNSSFNH LSSSTVLAGS HAVINGNPSS  300
SSSELIWAME EELPSLQTQA DNWGSPSSPL PPLESADTEH KPSCKISSQN SGLLEEVLHQ  360
SQTMDGSSQF INEMGWEPHW ELTSPLGHSS SSMFSQGNGE HKAITGYRTI SNNEMQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-31	34	137	5	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00348	DAP	Transfer from AT3G11440	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080497.1	1e-167	transcription factor GAMYB-like isoform X1
Refseq	XP_011080498.1	1e-167	transcription factor GAMYB-like isoform X2
Refseq	XP_011080499.1	1e-167	transcription factor GAMYB-like isoform X2
Refseq	XP_020549969.1	1e-167	transcription factor GAMYB-like isoform X2
TrEMBL	A0A0K1ETQ4	1e-174	A0A0K1ETQ4_TECGR; MYB transcription factor 4
STRING	Solyc06g073640.2.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2021	23	58