PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100156650061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 297aa    MW: 33876.7 Da    PI: 6.3016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100156650061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-0930681048
                                  HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  ++l++ +   G  +W+++++  g++R++k+c++rw +yl
  Ote100156650061|100156650061 30 KKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 68
                                  6899999999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6551668IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-113067IPR009057Homeodomain-like
PfamPF002491.6E-73068IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-123095IPR009057Homeodomain-like
CDDcd001675.26E-43068No hitNo description
Gene3DG3DSA:1.10.10.605.0E-56895IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
QHNGKTAVLR QAGGEEGAXX XXXXXXXXXK KLINFILTNG QCCWRAVPKL AGLRRCGKSC  60
RLRWTNYLRP DLKRGLLNQA EEQLVIDLHA RLGNRNAGMR LTTVLCYKPX XXXXXXXXXX  120
XXXXXXXXXX XXHIKKKLLK MGINPVTHEP LNKETTDNGQ NSQSDHAIAE KENKQHMLQI  180
KTSVPLCSTT EEVSYSPTDQ NSYSDELNVH VVSNLYENDP IINSLFREDP LQIEFPWEFD  240
SPQENLNCFS ASSWDQSCQW FLDCQDFGVH DFGFECFNDV VGIASNNLDP LKIGNDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081193.16e-89protein ODORANT1
TrEMBLA0A059PRE22e-86A0A059PRE2_SALMI; MYB-related transcription factor
STRINGMigut.A00867.1.p8e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154