PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100156520211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 23391.8 Da PI: 9.566 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.6e-15 | 7 | 46 | 12 | 51 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 fs+ rngi+KKA+ L L da+v++i++s++++l+ey s Ote100156520211|100156520211 7 EFSNKRNGIFKKAHKLTLLHDAQVSIIMLSTNNQLFEYTS 46 59************************************75 PP | |||||||
2 | K-box | 50.4 | 9.5e-18 | 58 | 148 | 1 | 91 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 yq++ g++ +++++e++ +el++L++ + +++re+ +++G++L++L++++L +Le+++ + l++i ++K +ll e ++l+ Ote100156520211|100156520211 58 YQSRVGVNIWSSHYEKMLEELRRLEDVNTTIRREIMKRKGKELDNLNMEQLCKLEEEMLRTLSNIQDRKVKLLEERQKTLR 138 78888999************************************************************************9 PP K-box 82 kkekelqeen 91 + ++ e n Ote100156520211|100156520211 139 ENLEMEYEYN 148 9877766555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.189 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-4 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-20 | 4 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-10 | 6 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-9 | 10 | 25 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-9 | 25 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-8 | 69 | 147 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.299 | 71 | 158 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MEMKNMEFSN KRNGIFKKAH KLTLLHDAQV SIIMLSTNNQ LFEYTSPTST TKKIIDQYQS 60 RVGVNIWSSH YEKMLEELRR LEDVNTTIRR EIMKRKGKEL DNLNMEQLCK LEEEMLRTLS 120 NIQDRKVKLL EERQKTLREN LEMEYEYNGR VVDKGSIAGG NLAYPAHPRR RRLQRGXXXX 180 XXXXNSCLTT AAMEVEDSV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9A7Q2 | 3e-43 | A0A4D9A7Q2_SALSN; Uncharacterized protein |