PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100155450041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 244aa    MW: 27456.2 Da    PI: 6.8561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100155450041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.64.1e-14463155
                        DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                                  +C++C+vlr++C++dC l+p++     p+++++++ +++k++G++ +++l++a+p + r+
  Ote100155450041|100155450041  4 SCNGCRVLRKGCSEDCCLRPCLqwlnsPESEANATLFLAKFYGRAGLINLINAAPSHLRP 63
                                  6******************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.0E-10463IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSEDCC LRPCLQWLNS PESEANATLF LAKFYGRAGL INLINAAPSH  60
LRPGTHIFSH TRFSPETXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX CQAAVEAVLG GGHVAPDIRH ISKETAASYQ PRNSRKRSAS RADSVANELF  180
LESEEKFTIT GWDEEAMRAL SRDSPILEPR LGEIGLELTL GFNPXXXTYV STVIQISDHM  240
HTQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.13e-33LOB domain-containing protein 40-like