PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100154910061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 33312.2 Da PI: 6.9406 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 5.9e-12 | 44 | 80 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Ote100154910061|100154910061 44 LINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 80 89*********************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Ote100154910061|100154910061 86 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.595 | 21 | 80 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0019 | 25 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.83E-24 | 41 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-17 | 43 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-10 | 44 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-6 | 44 | 80 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 81 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 86 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 88 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-7 | 106 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MELQHGKLSG GEYSCNQSEE EMDLRRGPWT XXXXXXXXXX XFTLINYIAH HGEGRWNSLA 60 RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD 120 NEIKNYWRTR VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAANANA STADSSAATY 180 NLDSSAQILQ PQPNIPSENS SAAASSDSLG TPVSDLTECY NNYPINQDFF PSNQMSNYGN 240 HQSDCFNQGS LDFINQQNSQ WMMDGGDASD NFWNVDDMWF LQHQFSNNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-20 | 23 | 127 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071358.1 | 1e-117 | transcription factor MYB108 | ||||
Swissprot | Q9FGY3 | 5e-89 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A2G9HKQ1 | 1e-117 | A0A2G9HKQ1_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.G00025.1.p | 1e-115 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Publications ? help Back to Top | |||
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