PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100154910061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 289aa    MW: 33312.2 Da    PI: 6.9406
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100154910061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.9e-1244801248
                                  HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Ote100154910061|100154910061 44 LINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 80
                                  89*********************************97 PP

2Myb_DNA-binding51.52.3e-1686129146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Ote100154910061|100154910061  86 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
                                   7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5952180IPR017877Myb-like domain
SMARTSM007170.00192582IPR001005SANT/Myb domain
SuperFamilySSF466893.83E-2441127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-174387IPR009057Homeodomain-like
PfamPF002493.5E-104480IPR001005SANT/Myb domain
CDDcd001671.34E-64480No hitNo description
PROSITE profilePS5129423.24681135IPR017930Myb domain
SMARTSM007171.3E-1485133IPR001005SANT/Myb domain
PfamPF002494.7E-1586129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2388134IPR009057Homeodomain-like
CDDcd001673.18E-7106129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELQHGKLSG GEYSCNQSEE EMDLRRGPWT XXXXXXXXXX XFTLINYIAH HGEGRWNSLA  60
RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD  120
NEIKNYWRTR VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAANANA STADSSAATY  180
NLDSSAQILQ PQPNIPSENS SAAASSDSLG TPVSDLTECY NNYPINQDFF PSNQMSNYGN  240
HQSDCFNQGS LDFINQQNSQ WMMDGGDASD NFWNVDDMWF LQHQFSNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-202312724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071358.11e-117transcription factor MYB108
SwissprotQ9FGY35e-89MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2G9HKQ11e-117A0A2G9HKQ1_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.G00025.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]