PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100154860131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CO-like
Protein Properties Length: 345aa    MW: 38761.5 Da    PI: 5.0637
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100154860131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.9e-071648335
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                                   r C+ ++e ++ l+C+ ++  lC +C  e H+
  Ote100154860131|100154860131 16 DRLCDFCNESKALLYCRADSAKLCFSCDREVHS 48
                                  679******99*******************994 PP
2CCT58.62.3e-20301343143
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                                   R+ a++RYkeK+ktR++++++rYesRK++AesR R+KGrF+k 
  Ote100154860131|100154860131 301 RDSAISRYKEKKKTRRYDRHVRYESRKVRAESRVRIKGRFAKM 343
                                   899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.00221455IPR000315B-box-type zinc finger
PROSITE profilePS5011910.211458IPR000315B-box-type zinc finger
PfamPF006432.4E-51648IPR000315B-box-type zinc finger
CDDcd000214.35E-81748No hitNo description
PROSITE profilePS5101714.356301343IPR010402CCT domain
PfamPF062034.5E-15301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNKAEPENYN SLNQTDRLCD FCNESKALLY CRADSAKLCF SCDREVHSTN QXXXXXXXXX  60
XXXXXXXXXX XXXXXQPFAA VRFLQFVAVV DLLLHRIGGA MPELRLGGLE DLGKKSLNLG  120
GGNEEGLLDL LVWETPSVVS LDDLIVSNEY DDSSPGFQAI GVPPLPKNRN ASCGKHKEEI  180
FSQLQEMAKK DPNFNGSLED FEPAKCLRDA APVREENEPE PVTAPSHQAC NGDWCFAGGL  240
PDEGFPSTLY GDFSEMNHLV PDKDSDAGDS ANGFQDIQPC VPVDSKTIQP LPVRELNTQE  300
RDSAISRYKE KKKTRRYDRH VRYESRKVRA ESRVRIKGRF AKMDH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.11e-131zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A4D9AJK31e-131A0A4D9AJK3_SALSN; Uncharacterized protein
STRINGMigut.D00173.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228