PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100154610011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HB-other

Protein Properties

Length: 253aa MW: 28226.1 Da PI: 5.6924

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100154610011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.8	3.3e-12	127	171	1	45
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rq + Ote100154610011\|100154610011 127 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQTQ 171 688999************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-11	110	171	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-13	113	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.519	124	172	IPR001356	Homeobox domain
SMART	SM00389	0.008	125	186	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-10	127	171	IPR001356	Homeobox domain
CDD	cd00086	2.66E-9	127	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNFGDFLDNN SCSGGGGARI VADLPXXXXX XXXXXXXXXP AGAIVQPRFL SESLSSKPMF 60 NSPGLSLALQ TSMEGQGEMG RMAENNEMSN VGGRRSRDEE HESRSGSDNM DGASGDDLDA 120 ADKPPRKKRY HRHTPQQIQE LESLFKECPH PDEKQRLELS KRLCLETRQT QLERHENSIL 180 RQENDKLRAE NMSIREAMRN PMCTNCGGPA VIGDISLEEQ HLRIENARLK DELDRVCALA 240 GKFLGRPISS SMP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091721.2	1e-144	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	6e-95	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A4D8ZU17	1e-147	A0A4D8ZU17_SALSN; Homeobox-leucine zipper protein
STRING	XP_009602856.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]