PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100153000071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 96aa    MW: 11224.8 Da    PI: 9.6871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100153000071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-182269148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT eEd++l ++++ +G g W++ ar  g++Rt+k+c++rw++yl
  Ote100153000071|100153000071 22 KGPWTMEEDLILMNYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 69
                                  79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6141773IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-231872IPR009057Homeodomain-like
SMARTSM007171.5E-112171IPR001005SANT/Myb domain
PfamPF002492.0E-162269IPR001005SANT/Myb domain
SuperFamilySSF466899.41E-222396IPR009057Homeodomain-like
CDDcd001673.18E-92469No hitNo description
Gene3DG3DSA:1.10.10.602.8E-77396IPR009057Homeodomain-like
PROSITE profilePS512947.347496IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MMSINSSFNR ENLSYADIEV RKGPWTMEED LILMNYIANH GEGVWNSLAR SAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITT EEQLLIMELH AKWGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-14199624100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849621.12e-52PREDICTED: myb-related protein 305
SwissprotP813916e-53MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2G9GRP45e-52A0A2G9GRP4_9LAMI; Uncharacterized protein
TrEMBLQ70RD21e-51Q70RD2_GERHY; MYB8 protein
STRINGMigut.H00102.1.p8e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]