PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100152750061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 555aa MW: 62301.9 Da PI: 7.2635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.9e-13 | 387 | 433 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Ote100152750061|100152750061 387 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 433 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.0E-24 | 46 | 179 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 383 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.87E-13 | 386 | 437 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-18 | 386 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 387 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 387 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-16 | 389 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MGVVGWSNDD KAMAAAVLGT KAFDYLMSSS VSAECSLMAM GNDENLQNKL ADLVERPNSS 60 NFCWNYAIFW QLSREAREDE ESEVTRILKM RLEDESQQTM RKRVLQRLHT LFGGGDEDNY 120 AFGLDKVTDT EMFFLASMYF SFPRGEGGPG KCFGSSKHVW ISDALKSSAD YCVRLSQMHP 180 GKHGTIEGGW IFIFVXXXXX XXXXXXXRSK QTAAVATVTD KKDTNGPIPN LAIGSRPEAI 240 PKIFGQDLNS SHVQYRENVP VRKAEVHDNR NWDARNRLPF TNNRNGFHAA TWTQYSPQTP 300 AKTRAELADR NREEFVLNNF QHQKPAQMQI DFTGATSRPL NSHQQSLESE LSDVEASCKE 360 EVAGLSEDKR PRKRGRKPAN GRDEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS 420 LLGDAIAYIT ELQKKLKDME SERERPGSIS REASGSEAIS TRDMHDLPSS INIESGQEEI 480 TVRVSCALDA HPASKVIQAI NDAQATIIDA KMATGSERVF HTFVVKSHGS ERLTKEKLME 540 ALSHKPNSPH QLTLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 381 | 443 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093944.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A4D8ZLA8 | 0.0 | A0A4D8ZLA8_SALSN; Transcription factor MYC2 | ||||
STRING | XP_009781532.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Publications ? help Back to Top | |||
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