PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100151890071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 26885.7 Da PI: 9.0876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 224 | 247 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+k+F++ +++H + H Ote100151890071|100151890071 224 HSCKSCNKTFNSENAMQSHAKAkH 247 79*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.34E-5 | 219 | 246 | No hit | No description |
Pfam | PF12171 | 3.3E-5 | 223 | 242 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0064 | 224 | 247 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.261 | 224 | 250 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 226 | 247 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MQTLALALSA VYAYKIPLSR LASFQLFSKN RACETPPASF ALTNNIFNGN GVLGIYFIGY 60 IADDNATEGE EFSSDDDEFE NELLEAQGNG LSKANNGILK PVAAKEGAKN KAKKEEEPDS 120 XXXXXXXXXX XXXXXXXXIP EIDSSDVSED DSXXXXXXXX XXXSPKVQQS KKRPAGSAGR 180 TPVPKKTKSA TPEKSGKKGQ NATPAPSKSA GKTKEQTPKS GGQHSCKSCN KTFNSENAMQ 240 SHAKAKHGGK |