PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100150970151

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13210.2 Da PI: 8.7292

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100150970151	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.8	4.5e-31	49	98	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs +g+lyey+ Ote100150970151\|100150970151 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSGRGRLYEYA 98 79***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.618	41	101	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.7E-39	41	100	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.23E-41	42	101	No hit	No description
SuperFamily	SSF55455	6.41E-30	42	104	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	43	97	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-33	43	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-27	50	97	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-33	63	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-33	78	99	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
METNSQPQFT AVVSLELLAL LPLFLASWMG FGNEESELRK NGRGKIQIKR IENTTNRQVT 60 FCKRRNGLLK KAYELSVLCD AEVALVVFSG RGRLYEYANN SAASDVMLGH GLGFEGLNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
1tqe_R	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
1tqe_S	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
3mu6_A	9e-21	42	101	1	60	Myocyte-specific enhancer factor 2A
3mu6_B	9e-21	42	101	1	60	Myocyte-specific enhancer factor 2A
3mu6_C	9e-21	42	101	1	60	Myocyte-specific enhancer factor 2A
3mu6_D	9e-21	42	101	1	60	Myocyte-specific enhancer factor 2A
6c9l_A	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
6c9l_B	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
6c9l_C	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
6c9l_D	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
6c9l_E	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
6c9l_F	9e-21	42	101	2	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082936.1	2e-40	floral homeotic protein AGAMOUS
Swissprot	Q01540	3e-38	AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBL	A0A4D9B436	2e-39	A0A4D9B436_SALSN; MADS-box transcription factor, plant
STRING	Cagra.9536s0004.1.p	6e-37	(Capsella grandiflora)
STRING	Bostr.30275s0374.1.p	7e-37	(Boechera stricta)
STRING	XP_006414034.1	2e-37	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625