PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100150920061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | AP2 | ||||||||
Protein Properties | Length: 412aa MW: 45837.7 Da PI: 9.0418 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.7 | 3.9e-15 | 207 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ote100150920061|100150920061 207 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 258 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.3E-9 | 78 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.548 | 83 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-9 | 130 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.36E-11 | 131 | 174 | No hit | No description |
SuperFamily | SSF54171 | 5.69E-9 | 134 | 174 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 6.54E-18 | 207 | 268 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-10 | 207 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.81E-25 | 207 | 268 | No hit | No description |
SMART | SM00380 | 1.4E-33 | 208 | 272 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-18 | 208 | 266 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 208 | 266 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGLSMIKNWL RSHAPPPHAA DDEAAPPPPP SSAAGGGXXX XXXXXXXXXX XHSHQTTNCS 60 SVLRVRIVMV VQLSIDGRGD MKHICGIIVA EERDKLGKGG KFREMKNSVI EDSLGCKLTV 120 VHVSHFLECS LRRLFKHTAV YLGGYDKEDK AARSYDLAAL KYWGTTTTTN FPISNYESEL 180 EEMKHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 240 TQEEAAEAYD IAAIKFRGLN AVTNFEISRY DVRSIMESRN LPIGAGGRRL KDAGKADVAL 300 QIQRTDDSWP GLGFPPAQQP LTLHPYQRXX XXXXXXXXXX XXXXXXQDSD VGFQLGNNHG 360 FLQASMLQLH NLTGLEAEPG PDTGSRDAAY RTLYYQSQSC HGGPTFTMWN GA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077145.1 | 1e-111 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A4D9A6I8 | 1e-114 | A0A4D9A6I8_SALSN; AP2-like factor, ANT lineage | ||||
STRING | EOY09722 | 1e-103 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |