PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100149950041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 268aa    MW: 29417.1 Da    PI: 7.2659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100149950041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152471148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Ote100149950041|100149950041 24 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 71
                                  678*******************************************97 PP

2Myb_DNA-binding52.41.2e-1677120146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
  Ote100149950041|100149950041  77 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 120
                                   89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9771971IPR017930Myb domain
SuperFamilySSF466895.86E-2921118IPR009057Homeodomain-like
SMARTSM007173.9E-112373IPR001005SANT/Myb domain
PfamPF002495.2E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-242578IPR009057Homeodomain-like
CDDcd001676.64E-102771No hitNo description
PROSITE profilePS5129425.69972126IPR017930Myb domain
SMARTSM007175.3E-1676124IPR001005SANT/Myb domain
PfamPF002492.9E-1577120IPR001005SANT/Myb domain
CDDcd001677.83E-1279119No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2679127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRKPDHVIMV KEKVSSAVKP KLRKGLWSPE EDEKLMNYML TNGQGCWSDI ARNAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEELIIH LHSILGNRWS QIAARLPGRT DNEIKNFWNS  120
TIKKRLKNAN NANTTSSSPN NSDSSELRAN NVGGVVGGAI FMQEYDVAAV AAAACMDSSS  180
SSCSSMATQF VNSFNPSHLI DHNNIFDVGP VGPVFNLQHQ DHHDVGGASH LGGVLGDYGA  240
MEPYVMAMEN DLSVPGLEVR GVENSNYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-29812611128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162565.12e-96transcription factor MYB83
TrEMBLA0A2G9I1W91e-124A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009612035.11e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154