PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100149950001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37388.4 Da PI: 7.621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl Ote100149950001|100149950001 24 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 71 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ lG++ W+ Ia++++ gRt++++k++w++ Ote100149950001|100149950001 77 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 120 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.977 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.79E-29 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-9 | 27 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.699 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 79 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-11 | 79 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MRKPDHVIMV KEKVSSAVKP KLRKGLWSPE EDEKLMNYML TNGQGCWSDI ARNAGLQRCG 60 KSCRLRWINY LRPDLKRGAF SPQEEELIIH LHSILGNRWS QIAARLPGRT DNEIKNFWNS 120 TIKKRLKNAN NANTTSSSPN NSDSSELRAN NVGGVVGGAI FMQEYDVAAV AAAACMDSSS 180 SSCSSMATQF VNSFNPSHLI DHNNIFDVGP VGPVFNLQHQ DHHDVGGASH LGGVLGDYGA 240 MEPYVMAMEN DLSVPGLEVR GVENSNYGVS DYGMXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXIK VEELVGVGNH WXRRNLQNGR IGLGGFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 20 | 126 | 3 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027162565.1 | 7e-97 | transcription factor MYB83 | ||||
TrEMBL | A0A2G9I1W9 | 1e-127 | A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_009612035.1 | 2e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |