PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100149890021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 637aa MW: 70720 Da PI: 10.22

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100149890021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	13	48	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rWT eE ++++ ++ G++ Wk++a + +R+++++ Ote100149890021\|100149890021 13 RWTMEELTRFYESYRKNGKE-WKKVAIAVR-NRSPEMV 48 9*****************.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-7	10	57	IPR009057	Homeodomain-like
Pfam	PF00249	8.9E-6	13	48	IPR001005	SANT/Myb domain
CDD	cd00167	0.00478	13	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MQKRKLSDML GPRWTMEELT RFYESYRKNG KEWKKVAIAV RNRSPEMVEA LYTMNRAYLS 60 LPHGTASAAG LIAMMTDHYS NLAGSDSDQE SNDGAGSSRK PQKRVRGKVQ PTTPKASDEQ 120 YVSQSPIIAP DYGCLSLFKR KRSGVFKYFR IPLSAWYYVY NKSSIWKFAV LLSGSRHRPV 180 GSRPRPVGKR TPRFPVSFSY ENVNREKYFS PTRQGLKLKA NADDDEVAHE IAIALAEASQ 240 KGGSPQVSGT LNKKAESVMS SPFRHAERKN NAAEISNAKA TDTDEEDLEG STEADTGELS 300 RYKPPLPGSV SNGTMRQKGK RPEGRKHEVD NNNESHLDDI KEECSGTEEG QQLSAMGSKF 360 DGEVNDTKIS RSPMQRKKSK KALFGRDEGT AFDALQTLAD LSLMMPTENE DESRVHFKDE 420 QADHVDETVP FVSIPANQSR EKRRSSGVRI KGNLASSFDV ASSKTSKPGK ASAYDGSSVP 480 EENHDSHRSA TKSRKKQKVP VSKNQKTEIH ANIHLSESPG MEAEDASKKS MSKSKKSSQN 540 NSLKLKKVSE NSSGADLLKE GSDSAQSATQ VPVSQVNLPT KVRSRRKMNP KKAPVQKDLK 600 FPEKTSNDSN LSSGSLHDTT FRFKDLSNCL SNQHLRR

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MQKRKLSDML GPRWTMEELT RFYESYRKNG KEWKKVAIAV RNRSPEMVEA LYTMNRAYLS  60
LPHGTASAAG LIAMMTDHYS NLAGSDSDQE SNDGAGSSRK PQKRVRGKVQ PTTPKASDEQ  120
YVSQSPIIAP DYGCLSLFKR KRSGVFKYFR IPLSAWYYVY NKSSIWKFAV LLSGSRHRPV  180
GSRPRPVGKR TPRFPVSFSY ENVNREKYFS PTRQGLKLKA NADDDEVAHE IAIALAEASQ  240
KGGSPQVSGT LNKKAESVMS SPFRHAERKN NAAEISNAKA TDTDEEDLEG STEADTGELS  300
RYKPPLPGSV SNGTMRQKGK RPEGRKHEVD NNNESHLDDI KEECSGTEEG QQLSAMGSKF  360
DGEVNDTKIS RSPMQRKKSK KALFGRDEGT AFDALQTLAD LSLMMPTENE DESRVHFKDE  420
QADHVDETVP FVSIPANQSR EKRRSSGVRI KGNLASSFDV ASSKTSKPGK ASAYDGSSVP  480
EENHDSHRSA TKSRKKQKVP VSKNQKTEIH ANIHLSESPG MEAEDASKKS MSKSKKSSQN  540
NSLKLKKVSE NSSGADLLKE GSDSAQSATQ VPVSQVNLPT KVRSRRKMNP KKAPVQKDLK  600
FPEKTSNDSN LSSGSLHDTT FRFKDLSNCL SNQHLRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552958.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552959.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552960.1	0.0	protein ALWAYS EARLY 3-like
TrEMBL	A0A4D9BLF3	0.0	A0A4D9BLF3_SALSN; Uncharacterized protein
STRING	Migut.G00183.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33